MmuINT0132001 @ mm9
Intron Retention
Gene
ENSMUSG00000004952 | Rasa4
Description
RAS p21 protein activator 4 [Source:MGI Symbol;Acc:MGI:1858600]
Coordinates
chr5:136582941-136587186:+
Coord C1 exon
chr5:136582941-136583061
Coord A exon
chr5:136583062-136587121
Coord C2 exon
chr5:136587122-136587186
Length
4060 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
3' ss Seq
CACTCTGCCTTCCTCTGCAGGGA
3' ss Score
11.88
Exon sequences
Seq C1 exon
ATCAGGGATGTGACAAGACCCACTCTCGGGTGACCCTGCAGGAATGGAATGACCCACTGGATCATGACCTTGAGGCTCAGCTCATCTACAGGCACCTGCTAGGCGTGGAGGCTGCTCTGCG
Seq A exon
GTGAGGAGGCTCAAGGAGAGGCATCTGCATACTCCTAGCAGACATGTGCCACCTGAGGGCTGCAAATGGGCTTGTGGCTGAGGGTTGCTAAGTAACAGCTGGCCTCTGCCTTTGTCTTTTTCTCGTTTGCCTCTGGTTCCATGTTTGTTTTTCTGACTTGGGCATATTTACTTCTATCCAAGTGTGGTGTACATACCTTTGACCCCAGCACTTGGAAGGCTGAAGCAGAGGATTTCTATGAGTTGGAGGTCAACCTAAGTTACATGGCAAGTTCTAGGCCAGCCAAGGTTACACAGTGAGACACACCAACCAAACAAACCAAAAAATCTTTATATTCTTATTTTCATGTGTGTATGCCTCCTAATGCCATATGTGTGCAGGTGCCTGTGGAGGCCAGAAAAGGGCGTCAGGTCCCCTGGAGCTGTAGTTAAAGGTGATTGTGAGCCACCTGATGTGAGTGGGGGTGGGGCATGACGAAACTCAGTCCCCTAGAAGAGCCTTGAGCACCCTTAACCTCTCTCTGGCCATCTCACTCTCTTTGTTTCTAGTTCCATTTAATCTTGTTGTTTTACTTATGTGTACATATCTGCACATATGTGTGCCTGTGTGTGAGGATATGCACCTGAGTGCAGGTGCCTACAGAAGCCAGAGATGCTGGACGCCCCTGGAGCTGGAGTTGTGAGTACTGGGAAGACACTCAGGCCCTCTGGAGGAGAAGCACATGCTCTGAACCACTGAGATGTCTCTCCAGCATCCTCCTGTCTCTCCAGCATCCTTCTGTCTCTCCAGCATCCTCCTGTCTCTCCAGCATCCTTCTGTCTCTCCAGCATCCTCCTGTCTCTCCAGCATCCTCCCTTCTCTCCAGCATCCTCCTCTATCTCTCCAGCATCCTCCTGTCTCTCCAGAATCCTCCTGTCTCTCCAGCATCCTTTTTTTAAAATTTTTTAAAAAGTTTTTGTAACAAGTTCTCTGATTAGTCTTGAGCTCACTGCTTTGATAAAATTGGCTTCCCAGAATCCCCACCTATCTTTGATGACAAGTAAGCACTACCATGCCTGGCTTTTACATGGAAACTGGGCTCAAGCTAGGATTCTCATGCTTGCAGAGCAAACACTTGCCAACTGAGCTATCTATCTCCATGGTCCTCAGGGTCTTCCAACGTGTCCCAGGATTGTGGTTCTCCTATTTCAGTCTCTCGAGTAGTTGAAATGACAGGCCTGAGTGGCACGCCCAGCTTGGCCATCTTTTTTGCTTATTTCGTTTTGTGTGTATCTAATGTGTACATGGGGCCTGTGCTTCTTATCACACTTGTGTTGTTAGAGGAAACTTCGTGGAGTCAGTTCTCTTCTTCCACTTTTATGTGGAGTTCAAGGATTGAACTCAAGTCCTGGGGTTGTGCAACAAGCTCCTTTCCTCTCGAGCCATCTTGCTGGCCCTACATTCTCTCTCTTTTAATGAGGCCAACCTCCTTCCCACTGCCAGTCTGCATCATGAGGTCATCTCCTACTAGGAGGACAGAGGTCACAGCCACAACTGCTTCCTGTGCTAATTTGACCCTATCTACCCAGCCTTCTGGAGATGACAGCAGAACACTGACTTTGCCCTTAGCTAATTCTGAGTTCCTGAGTTATCTTGCTAATTAAGACAGGATGCTTTCTTTCTTTTTCTTTTTGTTGTTTTTGTTGTTTTTGTTTTGTTTTGTTTTTAGACAGGGTTTCTCTGTGTAGCCCCTGGCTATCCTGGAACTCACTCTGTAGATCAGGCTGGCCTTGAACTCAGAGATCCATCTGCCTCTACCTACTGATTGCTAGATTTAAAGGCATGTATTCCTACCACCAGGCTCCAGGATGCTTTCTAAAACAACTTTGCCCAACAGGATCCCTGGGCCCCATTTAGCTCTGAATCACTGGGTAGGGCCAGGCTGAAGGATGCTCTGAGGCCATCTCAGCTCCCTACAGCCTTCTCCTGGGCTACACAAAAGGGACTGCTTGTCTGCACATGCATCCTGGACCCTAGGCAAGTGACTCAAAGGTCATCCTTGTTACTCAGTGATCCTCCAGGGTTTTGGACATCCTTCAAAAACCTGGGCAGGAAATATGACTCAGCAGTTTTGAACGCTGACCTGATATCTCACAATTCTCTGTGATTCTAGTTCCAAGAGGGTCAAACACCTTCTTTGGGCTTCTTCGAAAACCAGGCATGCACACATGTGCTGCACAAACAGGCACACGTTTACACACAACAGCTATACATATAAAATAATAAGTTTTAAAGTTTTTTATAAAAATCGGAGCATAATAGTGCATGCCTTTATTTCTAGCACTTGGGAAGCAGAGGTGAGAGAATCTCCAAGTTCGAGGCCAGCCTGGTCTATAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTTCCAAAAACAAACAAACAAGCAAACAAACAAACAAAACCAACAGAACCTCAGAGTTAGGCACAGCCCTCATGACTATAATCCCAGCATTCTGGAGGTGGAGGCAGGAGAATGAGAAGGTAAGGTTTTTCTCTGTTACATAGTGAGTTTAAGACCTGCCTGGGTCACCAAAAAAAGAAGAAAGAGGAAGAGGAGCGGGCATGGTGACGATGCCTTTAATCCCAGCACTCAGGAGGCAGAAGTAGGCAGATTTCTGAGTTCAAGGCCAGCCTGGTTTACAAAGTGAGTTCCAGGACAGCCAGGGATACACAAAACAAAGAAACCCTGTCTTGAAAAACCGAAAAAAAAAAAAAAAAGAAAAAGAAAAGAAAGAAAGAAAAGAAAGAGGAGGAGGAGGAAGAGGAGGAAGAAGAATAGGAGGAAGAGGAGGAGGAGAAGGAGAAAGCTGGCCAGTGGTGGCACACACCTTTAATCCCAGCACTTGGGAGGCAGAGGTCAGCCTGGTCTATAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAAAACCAAAAGCAAAATAAGACCCAATCTTGGAAATCAAAATAGCTAAATGTGATGGGATTTCTTTTCTTTTCCTATTTATTTATTTATTTATTTATTTATTTAATGTATATAAATGTTTTATCTGCATGTACACCTGATGCCTGAAGAGGGCGTCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCGGGATTTGAACTCAGGACCTCTGGATGAACAGCCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCCACCCCAACCCACCCCACCCCCTTTTTGAGATAGGGCTCTGTGTATCTCTAGAACCTGCTCTGCAGACCAGGCTGGCCTGGAACTCAAAGATCTGCTGTTTCCCAAGTACTGGGATTAAAGGGGTCCATCACCGTGTCAGACTGGCAGGGAATGCTTTTAATCCCAACACTGGAAAGGCAGAGGGAGTTCAAGCATGTTCTACATAGTGAGACCCTGTATCAGAAACAAACAGAACCCACAAAACAACAACAAAACAAAACAAGAACAAAAAAGAAACACTGACATAACAAGGCCTGTAAGACAATCAAAGAGGGCTAGCCCAGCACAAGGAAGACCAGGCTCTCCCATTCCAGCCCTACCCCTAACTTACCCCCCACACCCACCCCGTAACTGGCATTTGATGTCCTTCAGACCCCATCTGGCTCATTTCCCATAGGCCCTGCAAAACCAGGGTGACACAGCTTGGCTGGGTTTGCCATTCTCTTTCTGGCAAGGCACGGTGCTCATTCCTGTACCCTTGGCACTAGGGAGGCTGAGGCAGGGGGATTGCAATTTCCAGGTCAGGCTTGGCTGTATGGAGAGAAGAGCTTTACAAGTATTGGTGGGGAGAGACTTTTGGCTGCTCTGTGTTTGAACGGTGAGAGGAACGTGGCTGGAACTAGAAACGTAGAGGCTGGGCCTGAGTTGATTCCTTGTGGACTGAAAGCACCTGTTTGTACCCCTGGAGCAGCACTCCCTGTTCAGGGAACCCCTGTGACATCTCTGCCTTCCCAGCAAGTTAGTTGTGGTTGCTGGCCCTCACTCTGCCTTCCTCTGCAG
Seq C2 exon
GGAAAGATACCAGCTCCTGCGTGGGGCGACAGAAGCAGGTGTCTCACCCACGGGCTGTGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004952-Rasa4:NM_133914:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=NA C2=0.304
Domain overlap (PFAM):
C1:
PF0077914=BTK=PD(28.1=22.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: