MmuINT0132001 @ mm10
Intron Retention
Gene
ENSMUSG00000004952 | Rasa4
Description
RAS p21 protein activator 4 [Source:MGI Symbol;Acc:MGI:1858600]
Coordinates
chr5:136107071-136111316:+
Coord C1 exon
chr5:136107071-136107191
Coord A exon
chr5:136107192-136111251
Coord C2 exon
chr5:136111252-136111316
Length
4060 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
3' ss Seq
CACTCTGCCTTCCTCTGCAGGGA
3' ss Score
11.88
Exon sequences
Seq C1 exon
ATCAGGGATGTGACAAGACCCACTCTCGGGTGACCCTGCAGGAATGGAATGACCCACTGGATCATGACCTTGAGGCTCAGCTCATCTACAGGCACCTGCTAGGCGTGGAGGCTGCTCTGCG
Seq A exon
GTGAGGAGGCTCAAGGAGAGGCATCTGCATACTCCTAGCAGACATGTGCCACCTGAGGGCTGCAAATGGGCTTGTGGCTGAGGGTTGCTAAGTAACAGCTGGCCTCTGCCTTTGTCTTTTTCTCGTTTGCCTCTGGTTCCATGTTTGTTTTTCTGACTTGGGCATATTTACTTCTATCCAAGTGTGGTGTACATACCTTTGACCCCAGCACTTGGAAGGCTGAAGCAGAGGATTTCTATGAGTTGGAGGTCAACCTAAGTTACATGGCAAGTTCTAGGCCAGCCAAGGTTACACAGTGAGACACACCAACCAAACAAACCAAAAAATCTTTATATTCTTATTTTCATGTGTGTATGCCTCCTAATGCCATATGTGTGCAGGTGCCTGTGGAGGCCAGAAAAGGGCGTCAGGTCCCCTGGAGCTGTAGTTAAAGGTGATTGTGAGCCACCTGATGTGAGTGGGGGTGGGGCATGACGAAACTCAGTCCCCTAGAAGAGCCTTGAGCACCCTTAACCTCTCTCTGGCCATCTCACTCTCTTTGTTTCTAGTTCCATTTAATCTTGTTGTTTTACTTATGTGTACATATCTGCACATATGTGTGCCTGTGTGTGAGGATATGCACCTGAGTGCAGGTGCCTACAGAAGCCAGAGATGCTGGACGCCCCTGGAGCTGGAGTTGTGAGTACTGGGAAGACACTCAGGCCCTCTGGAGGAGAAGCACATGCTCTGAACCACTGAGATGTCTCTCCAGCATCCTCCTGTCTCTCCAGCATCCTTCTGTCTCTCCAGCATCCTCCTGTCTCTCCAGCATCCTTCTGTCTCTCCAGCATCCTCCTGTCTCTCCAGCATCCTCCCTTCTCTCCAGCATCCTCCTCTATCTCTCCAGCATCCTCCTGTCTCTCCAGAATCCTCCTGTCTCTCCAGCATCCTTTTTTTAAAATTTTTTAAAAAGTTTTTGTAACAAGTTCTCTGATTAGTCTTGAGCTCACTGCTTTGATAAAATTGGCTTCCCAGAATCCCCACCTATCTTTGATGACAAGTAAGCACTACCATGCCTGGCTTTTACATGGAAACTGGGCTCAAGCTAGGATTCTCATGCTTGCAGAGCAAACACTTGCCAACTGAGCTATCTATCTCCATGGTCCTCAGGGTCTTCCAACGTGTCCCAGGATTGTGGTTCTCCTATTTCAGTCTCTCGAGTAGTTGAAATGACAGGCCTGAGTGGCACGCCCAGCTTGGCCATCTTTTTTGCTTATTTCGTTTTGTGTGTATCTAATGTGTACATGGGGCCTGTGCTTCTTATCACACTTGTGTTGTTAGAGGAAACTTCGTGGAGTCAGTTCTCTTCTTCCACTTTTATGTGGAGTTCAAGGATTGAACTCAAGTCCTGGGGTTGTGCAACAAGCTCCTTTCCTCTCGAGCCATCTTGCTGGCCCTACATTCTCTCTCTTTTAATGAGGCCAACCTCCTTCCCACTGCCAGTCTGCATCATGAGGTCATCTCCTACTAGGAGGACAGAGGTCACAGCCACAACTGCTTCCTGTGCTAATTTGACCCTATCTACCCAGCCTTCTGGAGATGACAGCAGAACACTGACTTTGCCCTTAGCTAATTCTGAGTTCCTGAGTTATCTTGCTAATTAAGACAGGATGCTTTCTTTCTTTTTCTTTTTGTTGTTTTTGTTGTTTTTGTTTTGTTTTGTTTTTAGACAGGGTTTCTCTGTGTAGCCCCTGGCTATCCTGGAACTCACTCTGTAGATCAGGCTGGCCTTGAACTCAGAGATCCATCTGCCTCTACCTACTGATTGCTAGATTTAAAGGCATGTATTCCTACCACCAGGCTCCAGGATGCTTTCTAAAACAACTTTGCCCAACAGGATCCCTGGGCCCCATTTAGCTCTGAATCACTGGGTAGGGCCAGGCTGAAGGATGCTCTGAGGCCATCTCAGCTCCCTACAGCCTTCTCCTGGGCTACACAAAAGGGACTGCTTGTCTGCACATGCATCCTGGACCCTAGGCAAGTGACTCAAAGGTCATCCTTGTTACTCAGTGATCCTCCAGGGTTTTGGACATCCTTCAAAAACCTGGGCAGGAAATATGACTCAGCAGTTTTGAACGCTGACCTGATATCTCACAATTCTCTGTGATTCTAGTTCCAAGAGGGTCAAACACCTTCTTTGGGCTTCTTCGAAAACCAGGCATGCACACATGTGCTGCACAAACAGGCACACGTTTACACACAACAGCTATACATATAAAATAATAAGTTTTAAAGTTTTTTATAAAAATCGGAGCATAATAGTGCATGCCTTTATTTCTAGCACTTGGGAAGCAGAGGTGAGAGAATCTCCAAGTTCGAGGCCAGCCTGGTCTATAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTTCCAAAAACAAACAAACAAGCAAACAAACAAACAAAACCAACAGAACCTCAGAGTTAGGCACAGCCCTCATGACTATAATCCCAGCATTCTGGAGGTGGAGGCAGGAGAATGAGAAGGTAAGGTTTTTCTCTGTTACATAGTGAGTTTAAGACCTGCCTGGGTCACCAAAAAAAGAAGAAAGAGGAAGAGGAGCGGGCATGGTGACGATGCCTTTAATCCCAGCACTCAGGAGGCAGAAGTAGGCAGATTTCTGAGTTCAAGGCCAGCCTGGTTTACAAAGTGAGTTCCAGGACAGCCAGGGATACACAAAACAAAGAAACCCTGTCTTGAAAAACCGAAAAAAAAAAAAAAAAGAAAAAGAAAAGAAAGAAAGAAAAGAAAGAGGAGGAGGAGGAAGAGGAGGAAGAAGAATAGGAGGAAGAGGAGGAGGAGAAGGAGAAAGCTGGCCAGTGGTGGCACACACCTTTAATCCCAGCACTTGGGAGGCAGAGGTCAGCCTGGTCTATAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAAAACCAAAAGCAAAATAAGACCCAATCTTGGAAATCAAAATAGCTAAATGTGATGGGATTTCTTTTCTTTTCCTATTTATTTATTTATTTATTTATTTATTTAATGTATATAAATGTTTTATCTGCATGTACACCTGATGCCTGAAGAGGGCGTCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCGGGATTTGAACTCAGGACCTCTGGATGAACAGCCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCCACCCCAACCCACCCCACCCCCTTTTTGAGATAGGGCTCTGTGTATCTCTAGAACCTGCTCTGCAGACCAGGCTGGCCTGGAACTCAAAGATCTGCTGTTTCCCAAGTACTGGGATTAAAGGGGTCCATCACCGTGTCAGACTGGCAGGGAATGCTTTTAATCCCAACACTGGAAAGGCAGAGGGAGTTCAAGCATGTTCTACATAGTGAGACCCTGTATCAGAAACAAACAGAACCCACAAAACAACAACAAAACAAAACAAGAACAAAAAAGAAACACTGACATAACAAGGCCTGTAAGACAATCAAAGAGGGCTAGCCCAGCACAAGGAAGACCAGGCTCTCCCATTCCAGCCCTACCCCTAACTTACCCCCCACACCCACCCCGTAACTGGCATTTGATGTCCTTCAGACCCCATCTGGCTCATTTCCCATAGGCCCTGCAAAACCAGGGTGACACAGCTTGGCTGGGTTTGCCATTCTCTTTCTGGCAAGGCACGGTGCTCATTCCTGTACCCTTGGCACTAGGGAGGCTGAGGCAGGGGGATTGCAATTTCCAGGTCAGGCTTGGCTGTATGGAGAGAAGAGCTTTACAAGTATTGGTGGGGAGAGACTTTTGGCTGCTCTGTGTTTGAACGGTGAGAGGAACGTGGCTGGAACTAGAAACGTAGAGGCTGGGCCTGAGTTGATTCCTTGTGGACTGAAAGCACCTGTTTGTACCCCTGGAGCAGCACTCCCTGTTCAGGGAACCCCTGTGACATCTCTGCCTTCCCAGCAAGTTAGTTGTGGTTGCTGGCCCTCACTCTGCCTTCCTCTGCAG
Seq C2 exon
GGAAAGATACCAGCTCCTGCGTGGGGCGACAGAAGCAGGTGTCTCACCCACGGGCTGTGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004952:ENSMUST00000042135:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=NA C2=0.304
Domain overlap (PFAM):
C1:
PF0077914=BTK=PD(28.1=22.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types