HsaINT0137666 @ hg19
Intron Retention
Gene
ENSG00000105808 | RASA4
Description
RAS p21 protein activator 4 [Source:HGNC Symbol;Acc:23181]
Coordinates
chr7:102223451-102224785:-
Coord C1 exon
chr7:102224665-102224785
Coord A exon
chr7:102223516-102224664
Coord C2 exon
chr7:102223451-102223515
Length
1149 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CACTCTGACCTCCCCCACAGGGA
3' ss Score
10.65
Exon sequences
Seq C1 exon
GTCAGGGCTGCGATAAGACCCGGTCACGGGTGACCCTGCAGGAGTGGAATGACCCTCTTGACCATGACCTTGAGGCCCAGCTCATCTACCGGCACCTGCTGGGCGTGGAGGCCATGCTGTG
Seq A exon
GTGAGTCCCACCCAGGAGAGCCTGTGCAGCCTGGGGAACGTGCCAGGCTTGGGGCTGCTCCATGGTGGCTGGTCACCTCTCTTGTAATTGGCCACATCTGGGGAGGGCACCAGGAGTACCTCTCTGCAGCACGAGGCCAGCTCAGGTTAGGACAGAGGCCCCAAGGGTCAGGGCCATGCCTGCTTCATGCCATGTGCTGACTGAGCCCACCTTGCAACCTGCCCAGCTGTTCCCCTGGGCCCTTGGAGTACAGGCACAGCCTCAGCCAATTCCCTGAGTTCCCTGGCCATCTTGCTTCATCCAGTGGTTCTCAGCCTTGGCAGAAGCTTAGAAAAAACAAGATGCTTTTAAAGATCAGCTTTAAAAAACAGGATGCCAAGGCCCCATCACTCAGGGTCTCTGGAGATGTGGCTGGTGCCAGGATACTTCAAGGTGATCCAGTGCTTCCCATGCGCTCAGCTTCCCCTGAGCCAACTGGAGCTGGAGCTCATTCATCTGTCACACCCCTACACTCTGCAAGGAGGAAGGGTGTGGTCCTCCCCATTCCTCATCGACTCTTCCAGGGTTTATCTCTGCCCTCAAAACCCACGAAGGTGGGGTGCGGTGACTCATGCCTGTTATCCCAGCTCTTTGGGAGGTGGAGGCAGGCAGATTGTTGGAGATCAGGAGTTTGAAACCAGCCTGGCCAACATGGCGAAACCTCTTCTCTACTAAAAATACAAAAATTAACTGATGTGGTGGAGGGTGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGTGGAAGTTGCAGTGAGCTTAGATTGCGCCACTGCACTCCAGCCTGGACCGCAGAACAAGACTCTGTCTCAAAAACAAAACAAAACAAATGCAAAGGGCCTTCTGGTCAACCCACAGTGGGATGGGGAGGAGGAGGAGACACGGGGAGGGAGAAGGTGGAAGGTGCCCTGGTGGGCCTTGGCCCAGCCTCTTCACAGACTGAAAGAGTCAGCCCTGCCATCACCCCCAGAGCCACCTCTAGCCCAGGAGGCCCATGCTGGGCCACCCCCAGCCTTCCCACAAGGACACCAGAAGGTCTGGCAGGGAGAGTGGAGGCTGCTGGCCCTCACTCTGACCTCCCCCACAG
Seq C2 exon
GGAGAGGCACCGGGAGCTGAGCGGGGGCGCAGAGGCAGGCACGGTGCCCACGAGCCCTGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105808-RASA4:NM_006989:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=NA C2=0.674
Domain overlap (PFAM):
C1:
PF0077914=BTK=PD(28.1=22.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGGGCTGCGATAAGACC
R:
CTTTGCCAGGGCTCGTGG
Band lengths:
186-1335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)