HsaINT0137666 @ hg38
Intron Retention
Gene
NA
Description
NA
Coordinates
chr7:102583004-102584338:-
Coord C1 exon
chr7:102584218-102584338
Coord A exon
chr7:102583069-102584217
Coord C2 exon
chr7:102583004-102583068
Length
1149 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CACTCTGACCTCCCCCACAGGGA
3' ss Score
10.65
Exon sequences
Seq C1 exon
GTCAGGGCTGCGATAAGACCCGGTCACGGGTGACCCTGCAGGAGTGGAATGACCCTCTTGACCATGACCTTGAGGCCCAGCTCATCTACCGGCACCTGCTGGGCGTGGAGGCCATGCTGTG
Seq A exon
GTGAGTCCCACCCAGGAGAGCCTGTGCAGCCTGGGGAACGTGCCAGGCTTGGGGCTGCTCCATGGTGGCTGGTCACCTCTCTTGTAATTGGCCACATCTGGGGAGGGCACCAGGAGTACCTCTCTGCAGCACGAGGCCAGCTCAGGTTAGGACAGAGGCCCCAAGGGTCAGGGCCATGCCTGCTTCATGCCATGTGCTGACTGAGCCCACCTTGCAACCTGCCCAGCTGTTCCCCTGGGCCCTTGGAGTACAGGCACAGCCTCAGCCAATTCCCTGAGTTCCCTGGCCATCTTGCTTCATCCAGTGGTTCTCAGCCTTGGCAGAAGCTTAGAAAAAACAAGATGCTTTTAAAGATCAGCTTTAAAAAACAGGATGCCAAGGCCCCATCACTCAGGGTCTCTGGAGATGTGGCTGGTGCCAGGATACTTCAAGGTGATCCAGTGCTTCCCATGCGCTCAGCTTCCCCTGAGCCAACTGGAGCTGGAGCTCATTCATCTGTCACACCCCTACACTCTGCAAGGAGGAAGGGTGTGGTCCTCCCCATTCCTCATCGACTCTTCCAGGGTTTATCTCTGCCCTCAAAACCCACGAAGGTGGGGTGCGGTGACTCATGCCTGTTATCCCAGCTCTTTGGGAGGTGGAGGCAGGCAGATTGTTGGAGATCAGGAGTTTGAAACCAGCCTGGCCAACATGGCGAAACCTCTTCTCTACTAAAAATACAAAAATTAACTGATGTGGTGGAGGGTGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGTGGAAGTTGCAGTGAGCTTAGATTGCGCCACTGCACTCCAGCCTGGACCGCAGAACAAGACTCTGTCTCAAAAACAAAACAAAACAAATGCAAAGGGCCTTCTGGTCAACCCACAGTGGGATGGGGAGGAGGAGGAGACACGGGGAGGGAGAAGGTGGAAGGTGCCCTGGTGGGCCTTGGCCCAGCCTCTTCACAGACTGAAAGAGTCAGCCCTGCCATCACCCCCAGAGCCACCTCTAGCCCAGGAGGCCCATGCTGGGCCACCCCCAGCCTTCCCACAAGGACACCAGAAGGTCTGGCAGGGAGAGTGGAGGCTGCTGGCCCTCACTCTGACCTCCCCCACAG
Seq C2 exon
GGAGAGGCACCGGGAGCTGAGCGGGGGCGCAGAGGCAGGCACGGTGCCCACGAGCCCTGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105808:ENST00000262940:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0077914=BTK=PD(28.1=22.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGGGCTGCGATAAGACC
R:
CTTTGCCAGGGCTCGTGG
Band lengths:
186-1335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains