GgaINT1000315 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF56]
Coordinates
chr19:4169098-4169362:-
Coord C1 exon
chr19:4169242-4169362
Coord A exon
chr19:4169169-4169241
Coord C2 exon
chr19:4169098-4169168
Length
73 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
ACCGCCCCCTTTCTCCGCAGGGA
3' ss Score
13.46
Exon sequences
Seq C1 exon
GGCCGGGATGCGGGCAGACCCGGCACAGCATCACCCTGCAGGACTGGAGCGATCCGTTGCAGCCCGACGTGGAGGCGCAGCGCCTCTTCCAGCACCTCCACGGCCTGCAGGAGCCTCTCAG
Seq A exon
GTGGGACCCCGGAAGCGGGGACGGCCCCCTGCGTGCCCTCTGCCCCACAGCTAACCGCCCCCTTTCTCCGCAG
Seq C2 exon
GGAAAAGTACTGGCAGCTGATGGAGGCGGGGGGGGCTCACGACGGCCCTCGGGGCTGCGGTGAAGGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001876:ENSGALT00000002911:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=NA C2=0.560
Domain overlap (PFAM):
C1:
PF0077914=BTK=PD(28.1=22.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCATCACCCTGCAGG
R:
CTCTACCTTCACCGCAGCCC
Band lengths:
169-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]