DreINT0124782 @ danRer10
Intron Retention
Gene
ENSDARG00000029372 | rasa4
Description
RAS p21 protein activator 4 [Source:ZFIN;Acc:ZDB-GENE-060526-349]
Coordinates
chr5:58711962-58714525:+
Coord C1 exon
chr5:58711962-58712082
Coord A exon
chr5:58712083-58714466
Coord C2 exon
chr5:58714467-58714525
Length
2384 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
3' ss Seq
TTTGTGCTTTCTTTTGGCAGAGA
3' ss Score
8.54
Exon sequences
Seq C1 exon
ACCCCGGCTGTGATAAAACCCGACATGGAGTGACTCTGCAGGAATGGTACGACCCACTGGACCCAGATCTGGAGGCTCAGCTCATCTATCAGCATCTCAGCAGCGTCCAGCATGCCATGCG
Seq A exon
GTAAGTGAGAAACAATCTACGATGTACCATTCAATTTTTTGCAAACAATACACAGCTGATTTGATCTCGGTGGAATCAGAATGACCATTACACCTTGGCGTGTACATTATTTTCGAATAATTCAAAAGACTGTTGTCAGTTATTCTAGATCAGAGATGCCCAGAGTCGGGCCTTCAGGACAAAGTTGGCTAATTGTAACCTTTGATTTGGCCCACCATCCCATCTGAGAAGAAAGTGAAAAGGATGGAGAGGGTTGGGGCGAATGCCTTTAAACGAGAACGCATTTCTAATTCGATGTAACGTTTTTTGTTTGTTTTATTGCTGAACTACAAAAAAAGCTAACTAAAATCAAATGTTTCAATTAAATGTAAATGAATCCGATTTTTAAAAATGTAAACAATGTCACTCGACGGTGTCATGGTCACCAGCGATCCAACCTGTGGAGAGATCACTGGTAAACACAGATCACATAGAACTACAAATTTGCCATTTATGAACTACAATTCCAGTCATGCATCACACACACACTCACACCGGTTCCTGATCCTGACTGATGGCAAACACAAAGCTGAAGCTGCTCATGGACTGATTTCAGGGCTATATACGCAGAACACAAACACACAGACTTTGCTTAGTTATGTTGAACTGTGAGTGAACATTACAACGTGTTTTCCTTTGTCTTGCTTTGTTTTTGACCCTCGCTATGTTGTGTTTGTTTTCGTTGTATGCTGCCTGCCTTTTTTGACCATCTGCCTGTTATTTTGACTATGACTCTGAATTGCCCTTTTACATCTGTTTGCTCCTGTGTTGACTGTTGCTTGCTTGAACATTCTCTGTTCAATAAAGACTCTGCATTCGGATCCGCACCTCTGTTCTCAAGGTCACTTCACGTTACAGATGAATAGAAGACAATGCAAAAAACATAGATGAGCAAATCAAGGCAAAAACTAGTGTAACTGCATTATGTTTTAAATGGGATGTGTTCATGTTTTAACTGTAATAAGTTCATTATAAAATGTTTTTAAAATGATGTATGGATAATATAAAGCAATGCTTTCCAGTTATTTTTAAATATTATTTCAAAACTTCACATTTAGGTATTGCTTGATAATATAGCAGGGGGGATGGGGTGGATGGGGGGTTTCTACAGAAAACAAAGATAGGGAGTACTTATAAACAGGCTACTTATAGTGAGTTTATAATAATCTGATTGGCTTACTAATGATTACAGATCAAAGACCAGCTGCGATCATTCATATCACATGCTCCTCTCGAAATTAGTTTGTGAAACTTCACTAAATAAATTAGAAAATCGACCATAACTATATTTACCTTCAGCCCACCTCAATCAAGGTTGGTGTAATAAAGTTAGATGGCCGCCTGGCCAACGGGAATAAGGAGGCGGAGAACCGACAAACCGACAAAAAAAGGTCCTCTCTCGTCTAGCTCTGGCATCTCTCCTCATTTAAGCTTCCAGGGCTCTTTCGTGAGACTTGAGGCAGGTGATGTGTCCAGGTGTCTTAGATTATATCACTCATGCCACCTGCCTCGTACGCCATCATGGCTCTCAGCCCCACCCTATTCACCACAGTTTGTTTTTGGCCCTTCTAAAGAAAAAGTTTTTGCACCCCTGCTTTAGATATACAACGATCACCTCATCTAAAGACGTTGTCCAGATGTTTTAAAAACATTTGTCAGGTTTTTCAACAACTTTTGAGCTTGAAAAGTTTGAAAAAGTGGCTTTTACTCACATTTTAATAGTTGAAGTGCTATATCGTCTGGGTTGGTAAAGAAACCTTGTAACAAACAAGCTACATTTTGTCATTTTACAGACTTATTCCTCTATAAACTATTTCATATACATTTATATTTTTTCAAACTATTAACATGTCAATAAAAGTCACTTTGTTAAATTGCAGAGTTGAAATTTCAACATCAAAAGTCAACAGAGCTGAGATCAACATCCCATAATACAATTCACAACCGTAAATAAAAGGAAAACACTTGTGAATCACAAAATACGGAACAGTTAATTAACTGAATTTTTTAACAATGCAGGCTGTCAAATCATGCAACACAGAGTGATATGGAAACATCAGGAACTGCTTTAGCAATGTGTTTATCTGAAAATATATGCCCAGTTGAGTATGTTCATCAGCCAGTCAGAATCAAAATGTCTTATAGTGACATTAGGTGACATTAACACACTAAATTGTGCATCCAATTATTCATAAATATAATAATAATATTAGAATTTAATTATACACAGTAGTTGAACATGTTTAAATTGGTTTTGTATTACTTCTTTGTATATGTTTTTCTCGAATGTATGTCAGTGTAAGTCTAGAAGTGCTAAAATGGTGTTTTGTGCTTTCTTTTGGCAG
Seq C2 exon
AGATAAGTATTATAAGTTGCGAGAGCAGCAAGGAATTCAGGAGGCAGATTCAGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029372:ENSDART00000097374:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=NA C2=0.524
Domain overlap (PFAM):
C1:
PF0077914=BTK=PD(28.1=22.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]