RnoINT0124468 @ rn6
Intron Retention
Gene
ENSRNOG00000001431 | Rasa4
Description
RAS p21 protein activator 4 [Source:RGD Symbol;Acc:1565457]
Coordinates
chr12:23597505-23601368:-
Coord C1 exon
chr12:23601248-23601368
Coord A exon
chr12:23597573-23601247
Coord C2 exon
chr12:23597505-23597572
Length
3675 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
CACTCTGTCCCCCTCTGCAGGGA
3' ss Score
11.66
Exon sequences
Seq C1 exon
ATCTGGGATGTGACAAGACCCATTCTCGGGTGACCCTGCAGGAGTGGAATGACCCACTGGACCATGACCTTGAGGCGCAGCTCATCTACAGACACCTGCTAGGAGTAGAGGCTGCTCTTCG
Seq A exon
GTGAGGAGGCTCAAGGAGAGGCAGCAGCAAATGTGCCAACCTGAGGGCTGCAGCTAGGGCTTGCTGGTTGCTAAGCAACAGCCGCCCTCTGTCTTGTTTGTTTGTTTGTTTGCCTCTGATTCCGTGTTTGTTTTCTGCCTGAGGCAGATTTACTTTTATCCAAGTGTGGGGTGCACAGTTTTGACCCCAGCACTTGGGAGGCAGAGGATTTCTATGAGTTGGACGGCAACCTAATTTGCATGGCAAGTTCTAGGCCAGCCAAGGGTGCACAGTGAGACCTTGCCTCAAAACAAACAAACAAACATGACGGAACTCAGTGCCCTAGAAGAGCCTTGTGCACCCTTCACCTCTCTCCAGCCATCTCCCCCACTTTTGTTTCTAGTTCCGTTTAATCTCATTGGTTTAAATTACATGTGCGCATGCGCACAAGCGCAGGCGCCTACAGAAGCCAGAGATGCTGGATGCCCGTGAGCTGGAGTTTTAAGTGCTGGGAATATGACTCAGGCCCTCCTGAGGAGAAGCACATGCCCCGAACCACTGAGACGTCTCTCCAGCATCCTCCTTTGTTATTTTTATTTTTTTATTTCTCGTGACAAGATCTCTGATCAGTCCTGAGCTCACTGCTTTGACAAGATTGGCTGCCCAGAATCCCCGCCTATCTTTGCCTCCCCAGCTCTGGGATTACAAGCAAGCACCACGGTGCCAGCTCTTTTACATGGAAACTGGGCTCAGACTAGAGTTCTCGTGCTTGCAAAGCAAACACTTACCAATCGGCTAGCTCTCTCCTTGGTCCTCATGGTCTTCCAATGTATGTATCCCGGGATTGTGATCCTCCTGTCTCAGTCTCTCAGAAGCTGAAATGACAGGCCTGACTGACCATGCCCAGCTTGGCCGTCTCTCTTTGGTATTGTTTTGTGTGTATCTAATGTGTACATGGGGGGCCTGTGTTCCCACATCATACATGTGGAGTTAGAGGACAACTTCATAGAGTCTGTTCTCTTCTTCTGTTTGCACTGCACGTGGGTCTCAGGGATTGAACTCAGGCCCTTGGGCTTGTGCAGCAAGCTCCTTTTCTTCTGAGCCATCTTGTGGCCCCACATTCTTTCTTTCTTTTTTCTTTTTTACGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCACATTCTTTCTTTTTTAATGAGGCCAAGCGCCTTCCCACTGCCCGTCTGCATCATGAGGTCATCTCCTATTAGGGTAGCAGGGGTCATGGCCATAACTGCTTCCTGTGCTAACTTGACCCCATCTACCCAGTCTTCTGGAGATGATTCAGAACAGTGGCTTTGCCCTCAGCTAAGTCTGTGAGTTCTGAGTTCCTGAGCTATCTTGCTAATTAAGAGACACTTGCTTCCTTCTTTCTTTCTTTGATTTTTGTTTGTTTTGTTTTATTTATATATTTTTTTTTGGTTCTTTTTTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCATTATTTATATTTTTAAGACAGGCTTTCTCTGCATACATAGCCCTTGGCTATCCTGGAACTTTCTCTGTAGATCAGGCTGGCCTCCAACTCAGAGATCCACCTGCCTCTGTCTACCAAATGCTGGATTTAAAGGCATGTATGACTACCACCAAGGCTCCAGAATGCTTTCTAAAACAACACTGACAAACAGGGTCCCTGGACCCCATTATCTCTGAGCTACTGGGTGGGGCCAGGCTGGAGGATGCTCTAAGGCCATCTCAGCTCCCTAGAGCATTCTCCTGGGCTACACAAACAGGCTGCTTGTCTGAACATGCATCCTGACCCCAGGCAAGTGATTCAAAGGTCCTTCTTGTTATTCAGTGATCTTCCAGGGTTTTGGTCTTCCCTCCAAAACCTGGGCGGGAGAGATGGCTCATCAGTTTTGAACACTGACCTGATAATCTCACAATTGTCTGTGATTCCAGTTCTAGCAGGGTCAGACACCTTCCTCTGGACTCTTCCCAAACCAGGCATGCAAGCACATGCTGTACAAACATTCACATGTGTATACAGAAAACTCTTATACATATAAAATATGAGGTTTTTAATTTTTTTTTATAAAAAGCTGGGCATGATGGCGCATGCTTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATCCCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTTCAGGACAGTCAGGGGTACACAGAGAAACCCTGTTCCAAAAACAAAACAGAACAAAACAAAAAGAACCTTTGGGTTGAGTTCATGACTATACTCCCAGCATTCTGCAGGTGGAGGCAGGAGGATGAGGTTTTTCTCTGTTATACAGTGAGTGTAAGACCTGCCTAGGCCACATATAACCCAATCTTGGAAACCAAAACAGATAAATTAGTGATGGAATTTCTTTTCTTTTCCTACTTATTTATTTAATGTATATGAATGCTCTATCTGCATGTACACCTGATGTCAGAAGAGGGCATCAGAACCAAGGCAGATGGTTGCGAGCCACCATGTGGTTGCTGGGGATTGAACTCAAGACCTCTGGATGCGCAGTCAGTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCAAGATTTATTATATACATTGCAGCTGTCATCAGACACAGCAGAAGAGGGTATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTAGTTGCTGGGATTTGAACTCAGAACCTTTTAAGAGCAGTTGGTGCTTTTAACCACTGAGCCATCTCTCCAGCCCATAGCCAATGCTCTTCATCACTTAATGTCCAGCGCACCCCACCCCTCTCTTTTGAGTTAGGGCTCTGTTGGCCTGGCTCTTTTAGAACCTGCTCTACAGACCAGGCTGGCCTGGAACTCAAAGATCTGCTCTGCCTCCTGGGTACTGGGATTACAGGCCTGCATTGCCATGCTGTACCATGGTGGTGAATGCTTTTAATCCCAGCACTGGAAAGGCAGAGGGCGTTCAAGCATTTTCTACATAGTGAGACCCTGTATCAAAAACAGACAAAACCCACAAAAATCAAGAACAAAACAAAACAAAAAAAGAAACATTGAAATAACAAGGCCTGTGGGACAGTGGAAGAGGGCTTGCCCAGCACAAGTTAGACTAGGCTATCTCATTCCAGCCCTTCCCCTAACTTCCTCCCATAACTGGCATTTGTGACCTTCAGACCCCATTCGGCTCATTCCCATAGACCCTGCAAGGCCACAGTGACACAGCTTGGCTCGGTTTGCCACTGGCCTTCTGACCAGGCATGGCGCTCATTCCTGTACTCCTAGCACTAGGGAGGCCGAGGCAGGGGGATTGCAATTTCAAGGTCAGGCTTGGCTGTATGGTGAGAACAGCTTTAAAAGTCTGGGCAGGGAGAGCTCCTGGCCTCTCAATGTTTGATTGGTGGGCTACAGAGGAACATGGCTGGGGCCGGAAAAGCGGGGCTCGTGCTGATGCCTTGTGGACTGAAAACCCTAGAGCCACTCCCTGCCCGGGGAGCCCAGGTGACAGCTCTGCCTTCCCAGCGAGGTAGTTGTGGTTGCTGGTCGTCACTCTGTCCCCCTCTGCAG
Seq C2 exon
GGAAAAGCACCAGCTCCTGAGCCGGGCAACAGAAGAAGCAGGCACCTCATCCACAGGCCGTGGCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001431:ENSRNOT00000001943:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=NA C2=0.750
Domain overlap (PFAM):
C1:
PF0077914=BTK=PD(28.1=22.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]