GgaINT1023380 @ galGal4
Intron Retention
Gene
ENSGALG00000008150 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr15:11192483-11192741:-
Coord C1 exon
chr15:11192621-11192741
Coord A exon
chr15:11192545-11192620
Coord C2 exon
chr15:11192483-11192544
Length
76 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
3' ss Seq
TCAGCGTCCTCGTCCTGCAGGGA
3' ss Score
9.11
Exon sequences
Seq C1 exon
CTCCCGGCTGCAGCCGGACCCACAGCGCGGTGGCGCTGGATGAGTGGAGTGACCCCCTGGACCCCGCAGCGGCGGCACAGAGCCTCTATGGGCACCTCCAGCGTGCAGGGACACGGCTGTG
Seq A exon
GTGAGGCCACGTGCTGGGGAGGCACCCATGGGTGTCATCACCCCCCCCGGGTGCACTCAGCGTCCTCGTCCTGCAG
Seq C2 exon
GGAGGTGGTGGCGGAACTTGAGGGCAGCGTGGCGGTGCAGAGCCCGGGGCCGAAGCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008150:ENSGALT00000013239:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=NA C2=0.545
Domain overlap (PFAM):
C1:
PF0077914=BTK=PD(28.1=22.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSGALT00000013239fB11311
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGATGAGTGGAGTGACCC
R:
CCACGCTGCCCTCAAGTTC
Band lengths:
119-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]