RnoINT0124489 @ rn6
Intron Retention
Gene
ENSRNOG00000001374 | Rasal1
Description
RAS protein activator like 1 [Source:RGD Symbol;Acc:1311820]
Coordinates
chr12:41417151-41419255:-
Coord C1 exon
chr12:41419135-41419255
Coord A exon
chr12:41417228-41419134
Coord C2 exon
chr12:41417151-41417227
Length
1907 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CTTTCCCTATCAACCCTCAGGCT
3' ss Score
8.93
Exon sequences
Seq C1 exon
CTGTTGGCTGTAGCCGCACACACTCAGCTGTCACGCTGGGAGACTGGAGTGACCCACTGGATCCTGACGCCGAAGCCCAGATGGTGTATCGCCAGCTGCTCCTGGGCCGAGACCAGCTCAG
Seq A exon
GTGGGTGTCACGTGCCTTATCCTGCTGTGGTCTCCTCACATTCATTCACCCCTGAAGAAGTGTTTCTCTCCCTCAGGGCTTCATGTAACCCAGGCTAGCCTTGAACTCACTATGTAGCAGATGTCCTTAAACTTGAGATCCTCCTGGTTGTACTTGCTCAGTGCTGGGCTTACAGGTGTGTGCTAGCATGCCTGGTTTATAGGGTGCTGAGGGCTGAGCCTCCAGCTCTGTGCATGTTAGGCAAACTACTGACTGAGCTGTAGGCTCAGCCCGTTTTCTTCCCTTTCTTTCTCTGTTTGCCCGTGCTGGGGGTGGAACTCAGAGCCTTATACTGCGCCAAGCTTCCACTCAGTCCCATTTATCCATCTTCTATCGCACTGGCTAAGCTTTTAGAGGTGTGCGGGCCACCATGGGGCCTCAGTGTTCAGGAATTGAGGGCTTAGATGTGTAAAGCAGACTGGGATAGTCTCAGTTAAGGCTTCTATGGCTGTGACAAAATCCATGACCAAAGTGACCTCTAAAAGAAAGCTTTTAACTATGGTTTGAGAGGTTTAGAGTCCATGATGGCCGACCAAAGACATGACAGCAGGAACAGCTCAGAGCTCACCTCTTGATCCCAAAGCAGGAGGCAGAGAGAGCTTACTGGGAATGGTTTGACTTTTGAAACCTCAACTCACATTCCCAGTGATATACCTTCTTCCACAAGGCCATACCTCCTCTCACAAGGCCACACCTCCTCTCACAAGGCCACACTTCCTCTTACAAGACCATTCCTCCCTTCACAAGGCCACTCCTCCTCCCACAAAGCCACACCCCCTCCCACAAGGCCATACCTCCACCCACAAAGCTACTCCTCTCCTGAAGACCACACCACTCAGAAGGCCACAACTTCTCAGAAGGCCCCACCTCCTCTCACAAGGCCACACCTCCCCCTAAAGGCCACACCTCCTCTCTCAAGGCCCCTCCTCCCACAAGGCCACTACTCCTCCCACAAGGACACACCTCCTCCCACAAGGCCATACTTCCTCACAAGACCACTCCTCCTCCCACAAGGCCACACCTCCTCTCACAAGGACACACCTCCTAATCCTTCCCAAGCAGTTCCCCCAACCAGGGACCAAGCATTCAAGCATATGAGCCTGTGAGTGTGGTTCTCGAAATTCAGATCACCCCAGGAAGCATTGGAACTTACAGTATGGGGGCTCCAGAGACTGAGGCATGGTGTTCTATATAACTTGGCTTCTGAGCCTTCCTGGTATCTTGGACACCTCCCCACTTCCTCCCCTGCCTCTACTTCCTGGCCTGAAGAGCTTTGTTACTTAGTGTTCCATCCCACTATAGAGAAGGTTCTGTACTGAGCTGCCTGGATTTAGATCTGGGCCAGTTAGGGGCTGTGTGGTTCTCTGCTAGTCATTTGGCTTTTCCATGCCTTGTATAGAAAACAAGGCTATAGGATACTGACCTCATAGTGAAAGGACACTACATAACCTCCCATATGTAGGAGATATTATTATGCTGTGTGGCCTTAGGCAAGTTCCTTGATCTCTCTGTGTCAGTGGTTTATCTGAACAGGGTTACTGGTAAGTACCTACCTCATGTAAGGTGACTGTGTAAGTAGATGAATTCATGTGTGTACAAGGCTTCTCGGTGTAGTGTCTGCTACTCTAGAAAGGTTTGTGGTCACTGAGTGGTGATAGTTTGTGATGATGGTGGTGATGGTGATGATGGTGATGATGATGATGGTGGTGGTGATGCTGCTGCTGCTGCTGACGACGACGACGACGACAACGACGACGATTGTGGTGGTGATGGTGATGAACCTGATTTCCTACAAGCAGCAGAGAATCTTGGGTAGGAGCAGCACTGTACCTCAGAAACCAATTTTGCCTTTCCCTATCAACCCTCAG
Seq C2 exon
GCTGAAACTGCTGGAGGACTCCAGCCTGGACACAGCTCCAGATGTGGACCCTGGGAAGGACTCCAGTGCTGTAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001374:ENSRNOT00000001856:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=NA C2=0.704
Domain overlap (PFAM):
C1:
PF0077914=BTK=PD(28.1=22.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTAGCCGCACACACTCAG
R:
CATCTACAGCACTGGAGTCCT
Band lengths:
191-2098
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]