HsaINT0137690 @ hg38
Intron Retention
Gene
ENSG00000111344 | RASAL1
Description
RAS protein activator like 1 [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr12:113100628-113102009:-
Coord C1 exon
chr12:113101889-113102009
Coord A exon
chr12:113100681-113101888
Coord C2 exon
chr12:113100628-113100680
Length
1208 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TTCTCCCTCTTACCTTCCAGGCT
3' ss Score
10.84
Exon sequences
Seq C1 exon
CCGCCGGCTGCAGCCGTACACACTCAGCTGTCACCCTGGGGGACTGGAGTGACCCACTGGATCCTGATGCTGAGGCCCAGACAGTGTATCGGCAGCTGCTCCTGGGGCGGGACCAGCTCAG
Seq A exon
GTGGGTGCCCCCACCCATCCCACTTCACCTCCTATGACCAGCCAGGCCAGCCCCCCACCGTGGCCTTGCTGTGTCCATTTATTCATTCTTCCCATGTGTGTTGGTGGATATTCCCCGGGGGCCTGGCCCAGGGTGGGGACTGGGTGTCTACACAGTCAGGGCTTGGGAAGCATCCTCAGTGGGAGGGGTCCCTTATGCAGAACTGGGTCTTGGGATCTTTTAATACCTGGAGCTCCAGAGACCCTGGCACAATTCACATAAAATCCTGGCCCCCTGCGCTTGCTAAATGACCTTGGATAGATCTCTTCCCCTTCCTGGCATGAGGATCACTATCACTGTTATTTGGTGACAGAGATTTGTCCCAACTCATTATAGAGTGGGTTCTGAAGCTGACCTGTCTGGGTTCAAATCGTGACCTGGCCACTTACTAGCTGTGTGATCTCTTTTTAAAAAAATTTATTTATTTATTTACTTAGACAGAGTCTGGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCATGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCTTGCTTCAGCCTCCCACATAGCCAGGATTACAGGCACTTGCCACCACGCCTGACTAGTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTAGTCTCCAGTTCCTGACTTCAAGTGATCCACCTGTCTCGCCTTGCCCTCTCAAAGTGCAGGGATTACAGGCATGAGCCACTGCACCCAACCAGTGCATCTGGAAAAGGGGGATAATAATGGTGGCGACCTCGTGGGTTGTCCTGAGGATCAAATGAGCTAATACAGGTAGAGCACTTTGTAGGTGCCTGGCCAGATAGTTAGCTTTCAATAAGTGATAATGATGCTGCTGCTGATGCTGTGTGACCTTAAGCAAGTTACCTAACCTCTCTGTGTCTCAGTGATCATCTGTATAATGGAGCTAATAGTAAATACCTACCTCATATGAGTTTGTCATGATAATTAAATGAGTTAATACATGTAAAAGGTTTAGAATAGTATCTGGCACTCTAGAAATGTTTGCTGTGTAGATGATGATGATGATGATGGTAGATGGTGATGGTGATGGTTCAGGAAAACTAATTTCTCAGAGAATTTCTGGGGTAGGAAGCAGGAATGGGAATCAGGGACCAGACTTGTCTTTCTCCCTCTTACCTTCCAG
Seq C2 exon
GCTGAAATTACTGGAGGATTCTAACATGGATACAACTCTGGAGGCAGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000111344:ENST00000261729:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=NA C2=0.263
Domain overlap (PFAM):
C1:
PF0077914=BTK=PD(28.1=22.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development