BtaINT0122603 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016739 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr17:63398175-63399315:-
Coord C1 exon
chr17:63399195-63399315
Coord A exon
chr17:63398252-63399194
Coord C2 exon
chr17:63398175-63398251
Length
943 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TTCTCCCTCTTAACTTTCAGGAT
3' ss Score
12.12
Exon sequences
Seq C1 exon
CTTCCGGTTGCAGCCGCACGCACTCGGCCGTCACCCTGGGGGACTGGAGTGACCCGCTGGATCCCGATGCTGAGACCCAGATGGTGTATCGGCAGCTGCTTCTGGGGCGGGACCGGCTCAG
Seq A exon
GTGGGTCCCACCCCATGATCACCGGTTCATTCTTCCCGTGTACCTCTGATGAGCTTCTGGGTGGGGACAGGCTCTAGGGGAGGACTGTTGCCATCCTCAGGTGGGCTCTGATACAGAACTAGATCTTGGGACCTTTTTTTTTTTTCACTTTGGCCATGCCACACGGCATGTAGGGTCTTAGTTCCCCCACCAGGGATTGAACCCTTGCCCCGGGACATTGGAAGCTCAGAGTCTTAACCACTGGGCTGCCAGGGAAGTCCCATGGATCTTGAGATCCTCTGATACCCAGGACTCCCGAGACACAAGTGGATGTGTGTTCCCACCCCCTCTTGGTTGATCTCAGGGTCACTGTAACTCAGTGATGGAGATTTGTTCCAGCTTACAGTGTGAGTCCTGAAGCTGGCCTGCCTGGGTTCAAATCCTGGACAGGCTGTGTGAAACTTGGGCGAGTTGCTTACCTTCTCTGTACCTCAGTTTTCTCAGTCTGGAAAATTAGGGTACCAACAGTCCTTACCTCATGGGGTTGTCCTGAGGACCGAAAGAACTCATACAGGTAAAGCACTTTGTAGGTGCCTGGACACATCGTTAGCTTTCTATATAATAAAAATATGAAATATAATACCCTTTCTAATAATAAAGGGTAACAATTATTATTATGCTGTGCAACCTTAGGCAAGTTGCTTTAGTTCTCTCTGTCTCAGTGGTCATCTGTGTAATGGAGCTCCTAGTAAGTATCCACCTGTGTTTTGTGCTAATTAAATGAGTTTATACATGGAAAGGGCTTGGAATAGCATCAGACACTCTATGTTTGCTGTGATGATGATGGCAATGGTGATGATTTAGTGGGAACCTGTAATGTTTCCTTCAACCAGCAGAATTTCTGGGTTCGAGAGCAGGATTGGGATTCAGGGACCAGCCTGGTTTTCTCCCTCTTAACTTTCAG
Seq C2 exon
GATGAAATTCCTTGAGGATTCCAACATGGATACAACTCTGGAGGCAGCCACAGAGCAGGGTTCCAGTGCCATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016739:ENSBTAT00000022254:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.134 A=NA C2=0.593
Domain overlap (PFAM):
C1:
PF0077914=BTK=PD(28.1=22.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development