HsaINT0137690 @ hg19
Intron Retention
Gene
ENSG00000111344 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:9873]
Coordinates
chr12:113538433-113539814:-
Coord C1 exon
chr12:113539694-113539814
Coord A exon
chr12:113538486-113539693
Coord C2 exon
chr12:113538433-113538485
Length
1208 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TTCTCCCTCTTACCTTCCAGGCT
3' ss Score
10.84
Exon sequences
Seq C1 exon
CCGCCGGCTGCAGCCGTACACACTCAGCTGTCACCCTGGGGGACTGGAGTGACCCACTGGATCCTGATGCTGAGGCCCAGACAGTGTATCGGCAGCTGCTCCTGGGGCGGGACCAGCTCAG
Seq A exon
GTGGGTGCCCCCACCCATCCCACTTCACCTCCTATGACCAGCCAGGCCAGCCCCCCACCGTGGCCTTGCTGTGTCCATTTATTCATTCTTCCCATGTGTGTTGGTGGATATTCCCCGGGGGCCTGGCCCAGGGTGGGGACTGGGTGTCTACACAGTCAGGGCTTGGGAAGCATCCTCAGTGGGAGGGGTCCCTTATGCAGAACTGGGTCTTGGGATCTTTTAATACCTGGAGCTCCAGAGACCCTGGCACAATTCACATAAAATCCTGGCCCCCTGCGCTTGCTAAATGACCTTGGATAGATCTCTTCCCCTTCCTGGCATGAGGATCACTATCACTGTTATTTGGTGACAGAGATTTGTCCCAACTCATTATAGAGTGGGTTCTGAAGCTGACCTGTCTGGGTTCAAATCGTGACCTGGCCACTTACTAGCTGTGTGATCTCTTTTTAAAAAAATTTATTTATTTATTTACTTAGACAGAGTCTGGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCATGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCTTGCTTCAGCCTCCCACATAGCCAGGATTACAGGCACTTGCCACCACGCCTGACTAGTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTAGTCTCCAGTTCCTGACTTCAAGTGATCCACCTGTCTCGCCTTGCCCTCTCAAAGTGCAGGGATTACAGGCATGAGCCACTGCACCCAACCAGTGCATCTGGAAAAGGGGGATAATAATGGTGGCGACCTCGTGGGTTGTCCTGAGGATCAAATGAGCTAATACAGGTAGAGCACTTTGTAGGTGCCTGGCCAGATAGTTAGCTTTCAATAAGTGATAATGATGCTGCTGCTGATGCTGTGTGACCTTAAGCAAGTTACCTAACCTCTCTGTGTCTCAGTGATCATCTGTATAATGGAGCTAATAGTAAATACCTACCTCATATGAGTTTGTCATGATAATTAAATGAGTTAATACATGTAAAAGGTTTAGAATAGTATCTGGCACTCTAGAAATGTTTGCTGTGTAGATGATGATGATGATGATGGTAGATGGTGATGGTGATGGTTCAGGAAAACTAATTTCTCAGAGAATTTCTGGGGTAGGAAGCAGGAATGGGAATCAGGGACCAGACTTGTCTTTCTCCCTCTTACCTTCCAG
Seq C2 exon
GCTGAAATTACTGGAGGATTCTAACATGGATACAACTCTGGAGGCAGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000111344-RASAL1:NM_004658:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.134 A=NA C2=0.263
Domain overlap (PFAM):
C1:
PF0077914=BTK=PD(28.1=22.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)