MmuINT0132023 @ mm10
Intron Retention
Gene
ENSMUSG00000029602 | Rasal1
Description
RAS protein activator like 1 (GAP1 like) [Source:MGI Symbol;Acc:MGI:1330842]
Coordinates
chr5:120676788-120678693:+
Coord C1 exon
chr5:120676788-120676908
Coord A exon
chr5:120676909-120678622
Coord C2 exon
chr5:120678623-120678693
Length
1714 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CTTTTCCTATCAACTCTCAGGCT
3' ss Score
8.84
Exon sequences
Seq C1 exon
CTGCTGGTTGTAGCCGCACACACTCAGCCATCACACTGGGAGACTGGAGTGACCCACTGGATCCTGACGCCGAGGCCCAGGCAGTGTATCGCCAGCTGCTCCTGGGGCGGGACCAGCTCAG
Seq A exon
GTGGGTGTCACCTGCCTCACCTCGCCGTGGCCTCCTCACATTCATTCATCCCTGAAGAAGTGTTTCCCTCCCTCAGGGTTTCATGTAGCCCAGGCTAGCCTTGAACTCGCAGTGTGGCAGATACCCTTAAACTTTGGATCCTCCTGCTTGTATTTCCTCAGCGCTGGGCTTTGGGTGTGTGCTGGTTTATGTGGTCTTGGGGACTGAGCCTCCAGCTTCATGCATGTTGGGCAAACTCTACCAACTGAACTGCAGGCTCAGCCCGTTTTCTTCCTGTTCTTTTTCTATTTGCCCGTGCTAGGGATGGAACTCAGAGCTTTGTACTCTGCTGAGCTTCAGCTCAGCCCCACTGATCCATCTTCTATCACCCTGGCTAAGCTTTCAGATGTGTGTGGGCCGCCGTGGGGCCTCAGTGTCCAGGGATGCAGAGCTTAGATCCGAAAGGCAGACTGGGATCGTCTCAGCTAAGGTTTATATGGCTATGACAAAACACTGATAAAGGAAAGCTTGTAACTCGGGGCTTATAGTTGCAGAGGGTTAGAGTCCATGATGGCAGACAAGACAGCAGGAGCAGCTCAGAGCTCACATCCTGATCCCAAAGCAGGAGGCAGAGAGAGCTAACTGGGTTAGCTAAAAGATTTGAGCCTTTTGAAACCTCAAATCCCACTCCCAGTGATACACCTCCTCCCACAAGGCCACGCCTCTTCCAAAGGCCACACCCCTCTCACAAGGCCACACCTCCCCTAAAGGCCACACCTCCTCCCACAGACCATTTCTCTTCCCACAAGGCCACACCTCCTTTCACAAGGCCACTCTTCCTCCCACAAGGCCACACATCCTCTCACAAGGCCACTCCTCTTCTCACAAGACCACACCCCTTTTGCAAGGCCACACCCCAAAGGCAACGCCTCTTCCCACAGGACACACCTCTTCCTACAAGACCACACCTCCTCTCACAAGGCCACTTTTCCTCCCACAAAGACATACCTCCTCTCACAAGAAGTGAGAACTTACAGAATGGGGGCTCCAGAGACTTAGGCATGATTAGTCTATATAACTTGGCTTCTGATCCTTCCTGGTGCCTTGGACACCTCCCTCCATCCCCCAGCTTCCTGGCCTTAAGAGCTTTGTTATTTAGTGACAGGTGTATCCCATCCCACTATGGAAAAGGTTCTTTACTTAGCTGCCTGAATTCAGATCCCGGCCAGTTAGGGGCTGTGTGGTTCTCAGCTCGTTATTTGGCTTCTCTGTGCCTCATATGAAAAAGGAGGTGACAGGACACTGACCTCATAGTACTGTCCTAAGGGTCAGAGGTGATCCTGTGAAAGGACACCACGTAACCTCCCATATGTAGGAGCTATTAGTATGCTGTGTGACAGTAGGTAAGTTCTTTGATCTCTCTGTGTGTCAGTGGTTTATCTGAACAGGATTATTGGTACCTCATGTAAGCTGGCTGTATAAGTAAATGAATTTATGCACGTACAAGGCTTCTCGGTGTAGTGTCTGCTACTCTAGAAAGGTTTGTAGTGACTGAGTGGTGAAGGTTGTGATGATGGTGGTGGTGGTGATGATGATGATGGTAGTGATGGTGATAATGATGACAATTGTAACCATGGTGATGACGAGATTTCTCCTACAAGCAGCAGAGAATCTTGGGTAGGAGCAGCATTGAGCCTCAGAAACCAGCCTTGTCCCTTTTCCTATCAACTCTCAG
Seq C2 exon
GCTGAAACTGCTGGAGGATTCCAGCCTGGACACAGAAGTGGACCCTGGGAGGGACTCCAGTGCCACAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029602:ENSMUST00000031606:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=NA C2=0.600
Domain overlap (PFAM):
C1:
PF0077914=BTK=PD(28.1=22.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGGTTGTAGCCGCAC
R:
TCTGTGGCACTGGAGTCCC
Band lengths:
190-1904
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types