BtaINT0001362 @ bosTau6
Intron Retention
Description
Bos taurus matrin 3 (MATR3), mRNA. [Source:RefSeq mRNA;Acc:NM_001102486]
Coordinates
chr7:52234298-52235405:+
Coord C1 exon
chr7:52234298-52234359
Coord A exon
chr7:52234360-52235363
Coord C2 exon
chr7:52235364-52235405
Length
1004 bp
Sequences
Splice sites
5' ss Seq
AATGTAGGA
5' ss Score
1.65
3' ss Seq
ATTTTCTGGTCTTTTTAAAGCTA
3' ss Score
8.27
Exon sequences
Seq C1 exon
GAGTGGAGTCAACATATCAATGGAGCAAGTCACAGTCGTCGATGCCAGCTTCTTCTTGAAAT
Seq A exon
GTAGGAGTCTGAAATACCTTTAAAGCATCAGTTAACTGTCAGAAACAGCCATTGATTGGTTTCGGGGAATTCATCGTTTACTTGTAATATCCACATTGTTATTACTGAATAGTTGACACTGTCCAGGCAATCACCAGTTACAAACAATGTTTAGGTCTGGAATTGTATGTGGAATATTAAGGTGGAGTGATAGCGGTACTTTGTTATTTAAAATGGAAAGAATTTTTAACAGACCTAAAGATAGCCATTGATGCATAAAATAGATTTATAAGAGCATTTTCAATAACAATAATATGTGCTCTGAGAATAAAGAAAATATTTTCCTTGAAGAAAAGGGGGAAGTTATACTAGAAGTAACAAGTTTTAAAGCAAAACCCTTCAGGATATATTTTTTGCTTTTGAGATACTTGTGATGGAGTTTAAGCTGCTAGGATAGAATTTGTAAAGAATCTCCCTACCTAAAGAACATGAAGCCCATTGTTCACTGGGGTGGCCATTTTCACATACAATCTTTGTTTCCCTATATAACCCACATTTCCAGTCCCTCATATAGCACTTCTTTGTGAATTAACAAATATAGGGAATTCCTGGATGCTCAGTGGTTAGGACTCCATGCACTTTTTCAGTGCCATGGGCCAGGCAGGGTTCAATCTCTGATCAGGGAACTAAGATCCCACAAGTTGTATGACCCTTCCTGACCACCACCACCCCCACCCCCCACCCCACCCCCCCCCCCACCAAGAAAAAAACAGATAAAGGACTATTTTATTGCAATATACATTACTTAACATTTTAAGCAATACGGAGCAAGTTAATTCTCCTTTATTTTGATTAATTTGACATTTTCCTTTGGAAGTATCTATATGACATGTTTTAAACAGTAATATTTCTAACACTTATACTACCGTATAATTTTACTAATAAATCTATTTTAAAGGCCAAACAAGGCTACTTTGTGAAAAGAACAGTTTTATTTTAAAGTTAATTTTCTGGTCTTTTTAAAG
Seq C2 exon
CTACCCAGAATGGAATCCTGACACTGATACAGGACATACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006756:ENSBTAT00000057156:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=NA C2=0.467
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]