GgaINT0018392 @ galGal3
Intron Retention
Gene
ENSGALG00000002478 | Q8UWC5_CHICK
Description
NA
Coordinates
chr13:2215223-2215983:-
Coord C1 exon
chr13:2215922-2215983
Coord A exon
chr13:2215265-2215921
Coord C2 exon
chr13:2215223-2215264
Length
657 bp
Sequences
Splice sites
5' ss Seq
AATGTATGA
5' ss Score
2.55
3' ss Seq
TCCTTTTTTTTCTTTTTAAGATA
3' ss Score
11.34
Exon sequences
Seq C1 exon
GAGTGGAATCACCATATCAATGGAGCGACTCATGGCCGACGCTGTCAGCTGCTGCTTGAAAT
Seq A exon
GTATGAACTCGAAGTACAGTAAACATTCTTGTGGCATGAGGGCACGTATAAGTAACCAACTGTCAACTGTGATGCTCAGAGCAAGCTTAAAAAAACATGCTGTGTGTAGCAGGGAATAAAGATACGCTACTTTAAAGGGCATTTTCGGGACACAAAAGGAGTGCTGGTTTTTAATTTTTGAATCCTGCTGATGCCTTAAATGCCTCCAAGGATGGGGACTGCATGTCCCTGGGCAGCCCATTGCAACACTAGACCTCCCTCCTATCAAGGAACGTCTTCTGCCCAGTCTGAGTCTCCCCTGATGCACCTTGAGGACATTTGCTTACATCCTATCATTTGCAAATCTGCTGCAACTTCTATTTTTATTTTTTACTAATCAGGCTTGTGCCAAGATTTTCTTTTTATTTGTATAATTGACTTATTCTATGCAAATTATAATATAAATCAGCAACCATGTTACTTTGAACGTAGGAGTTTTCTCATAAAGACTAGCACTCCCTTTTGTAGTTAGATACTGCAGTTCATGTAACATGTAAAGGTATTGCAGCCTATATGGAAATAGGTATAAAAGTTACCACGCAGTGAGAGGAGATTGGATTTTTCTTACCTTTACTCTTTTTTTTTTCTTTTTTTTTTTTCCTTTTTTTTCTTTTTAAG
Seq C2 exon
ATATCCAGAATGGAACCCTGACAGTGATTCAGGACATGGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002478:ENSGALT00000041230:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=NA C2=0.467
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]