MmuINT1022825 @ mm10
Intron Retention
Gene
ENSMUSG00000037236 | Matr3
Description
matrin 3 [Source:MGI Symbol;Acc:MGI:1298379]
Coordinates
chr18:35577558-35578457:+
Coord C1 exon
chr18:35577558-35577619
Coord A exon
chr18:35577620-35578415
Coord C2 exon
chr18:35578416-35578457
Length
796 bp
Sequences
Splice sites
5' ss Seq
AATGTAGGA
5' ss Score
1.65
3' ss Seq
ATTTTCTGATCTTTTTAAAGCTA
3' ss Score
8.19
Exon sequences
Seq C1 exon
GAGTGGAGTCAACATATCAATGGAGCAAGTCACAGTCGTCGATGCCAGCTTCTTCTTGAAAT
Seq A exon
GTAGGAATTTGAAATACATTTAAAGCATCCGTATCGTGAATCAGAAACAGCCATTGTTGGATTGGGGGATTTCATCGTTTACTTATGCATATGGTGTTACTGTCATAATTGATGATGTCTGGTTAATATTTAATCACATATATAAGAATAGCTTGTTGAATAATAGATGTGATAATGCTTTATTACTTTCTAATTTCTAGGATAAATATACATTGGCCTGTTAAGAAAGAATTTCAGTAGAATTAATGAAATAATAATAATAGTTAATACATGCTATAAAACAAAATAGGGAAGAATAATTTAAAATTACTAGAAACCAAGTGAAGTTCCATGTGGAAAGCTTTGACATCATGGCTTTAGTTCTGTATTTTGACTGCTACATTGAAATGGATTTCAAAGAAACTGTAGCACATATTGTCCATACATACATAATTCCTTTGGGGCTGTCCTTTCTTTCTGATGCCATACCTTAACTCTGCTCTGATATCTAATATTGGGGAAGGACACTGGTTTTTATTTATATAACCTGCTTTCTAATTCCTTGTGCAGCATTTTCCCTGCTTACAATTTAACAAAAGGAAGGAACATTTCAGCATGTATCACTTATGTTTACAACTCCAGATTGATTCCAAATCATTTGGTGCCTGAAGTTCTTTTTGAAATATCTATTAAATGCTTTTGACAATTAGATTCTCATAACTTTACTAATAAATCATCTCTGTTTTAGAGGCTTAACAGAGCTACTTTGTGAGAAGAACCATTTTATTTTAAAATTAATTTTCTGATCTTTTTAAAG
Seq C2 exon
CTACCCAGAATGGAATCCTGACAATGATACTGGACACACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037236:ENSMUST00000166793:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.294 A=NA C2=0.553
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types