HsaINT0100296 @ hg38
Intron Retention
Gene
NA
Description
NA
Coordinates
chr5:139314675-139315738:+
Coord C1 exon
chr5:139314675-139314736
Coord A exon
chr5:139314737-139315696
Coord C2 exon
chr5:139315697-139315738
Length
960 bp
Sequences
Splice sites
5' ss Seq
AATGTAGGA
5' ss Score
1.65
3' ss Seq
ATTTTCTGGTCTTTTTAAAGCTA
3' ss Score
8.27
Exon sequences
Seq C1 exon
GAGTGGAGTCAACATATCAATGGAGCAAGTCACAGTCGTCGATGCCAGCTTCTTCTTGAAAT
Seq A exon
GTAGGAGTTTGAAATACCTTTAAAACATCCTTATCGTGAATCAGAATCAGCCATTATTGGTTTTTGGGAGTTCATCATTTACTTGTAATATCCACAATGTTAATATCACATAGTGGTACTGTATGGACAATACTATTTACAAGTAAAATGTTTAGATCTGGAAATTTCATATTGAATATTAGATGCAGTAATAATATTTTGTTATTTAACATTTCTAGGATACATATATATTGGTCATTATACAAATTGGTGATTTTTACTAGACATAGTGAAAGATAGTATTTGATATGTAGAGTGGATTAAACAGTAGCATTTTTAATAATACATGCTCTAAAAATGTAAAAGATACGGAAAAGAGGGTAGGTTATTAAAAGATTCTAATTCATTGTCCAGCAAAATCCTTGGTGATGAATTTTTTTTTTTTTTTTGCTTTTGAGATCTTTGGTTTTGAGTTCAGGCTGCTACCATGAAATGGAATTCCTAAAGAAACTCCCTGCTTAAGCAGCACACAGTGCCCATTGTTCACTGGAGTTGGAATTTTCACATATGCCTAACTCTGTTGGGGCTATTCTTTCTTTCTAATGTCACAACTCAACTGTGCTCTTGGTATTAATATTGGAGAAGGAAAATCTGTGCTCTGTTCTTGTTTCTATGTAACCCACATTTCTAATTCTTTGTGCGGCACTTCCTCCTTACAATTTAACAAATAGAGGAAAAACTTAATTTCAACATTATCTGCATTTGCAAGCAATACAAAACAAGTTTATTCTCGTGGATTATTTTGAAGTTCTGAAATTTTTCTTTTGAAATATCTATTGGAAATGCTTTAAAACTATGTTTCTAACACTTAGACTCTCAGATAACTTTACTAATAAATGATCTCTATTTTAGAGGCCAAACAAGGCTGTTTTGTGAAAAGGACAGTTTTATTTTAAAGTTAATTTTCTGGTCTTTTTAAAG
Seq C2 exon
CTACCCAGAATGGAATCCTGACAATGATACAGGACACACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000280987:ENST00000394800:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development