BtaINT0002397 @ bosTau6
Intron Retention
Description
Bos taurus golgin A2 (GOLGA2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192195]
Coordinates
chr11:98886647-98887245:-
Coord C1 exon
chr11:98887207-98887245
Coord A exon
chr11:98886710-98887206
Coord C2 exon
chr11:98886647-98886709
Length
497 bp
Sequences
Splice sites
5' ss Seq
AAAGTAATG
5' ss Score
1.16
3' ss Seq
TTTCTTCTCTCTTTCTGCAGGAA
3' ss Score
13.82
Exon sequences
Seq C1 exon
AAACAAGAGAACCAGGAAACTTTGGATCAGCTGGAAAAA
Seq A exon
GTAATGCGATTTCTTTGTTTCTTCCATGGCTAATGGGGCTTCCCTGGTGGCTCAGTGGTAAAGAATCCATCTGCCAATGCAGGAGATGAGGATTCAATCCCTGGGTCAGGAAGATCCCCTGGAGAAGGAGATGGCAACCCACTCCAGTGTTCTTGTCTGGGAAATCCCATGGACAGAGGAAGCCTTTTGGGCTGTAGTCCATGGGGTCGCAAAAGAGTCAGACATGACTTAGCGACTAAACAATCCATGGCTGATGGGTTTGGGGGAGGATTCAGATGTAGAGGACCATTCTCCTCTTGGCTGCTTACAGCCTGGAGGAATAGGTGGCTTCCCTCTTTCCCTACTCGCCCGTCTTCCACTCCCTGGGTGCCGATTATCTGTTCTCATTGGTGGGCCTGTCCTGGGCCTGTGGTGGCATCCCCGGGCGGGGCACATGTCCTTTTCTCGTTCACTTTTGCCTCCTCCCAGTAAGAGTTGTTTCTTCTCTCTTTCTGCAG
Seq C2 exon
GAAAAGAAGGAATTTGAGCAGAAGCTTGCAAAGGAGCAAGGGGCTCTGAGAGAACAGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011317:ENSBTAT00000015044:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.556
Domain overlap (PFAM):
C1:
PF0252012=DUF148=FE(13.8=100)
A:
NA
C2:
PF0252012=DUF148=PD(10.3=42.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development