GgaINT0124935 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF84]
Coordinates
chr17:5003185-5003948:+
Coord C1 exon
chr17:5003185-5003223
Coord A exon
chr17:5003224-5003885
Coord C2 exon
chr17:5003886-5003948
Length
662 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
GGCATTGTTTGTTTGTACAGGAA
3' ss Score
6.56
Exon sequences
Seq C1 exon
AAGCAGCAGAACCAAGAAGCAGTGAATCAGCTGGAGAAG
Seq A exon
GTAAAGTGTGTCCTATTTTTGGATAGAGATAGAAATAGATTTGTTCTTCTGAAGAAGAGAAAGCACAGCGGCCTGTGGCACCAGCCTATGTGATCTTGTCTTATAGAGCTGTAGGATCACTTAGGTTGGAAAAGACTGTTAAAATCATCAAGTCAGTCCTACCATCTGCTCAGCACTACCAAACCCACCACTAAACAGTGCCTTTAAGCACCACATCCACACATCTCGTAAATCGCTCCAGGATGGTGACTCCATCACTTCCGTGGAGATCATCCTAGAGTCGGGTCTGTTTGTAGCATTGGGTTGAGTATTTTGACTCCATGAGCCAGGCCTGGCACAGAGCTTGCTTGTTTTGATGAAAGTTAAGATTTAAATGCTCAAGTATTGGAAGGCTGCAGTGGAAGCAACAGATTACAGTTTACGGTCCTGTCAGTAGTTTGCATTCCAAACACTGCCAGCATAAGGAACCTACTGTTGCCATTCTAGGATGGATAACCAATAAAGTAGTTAAAGAAATGGAAGACTGAAGCATGGCTATTAAAAATGATGATACTGGTTAGATGCTGGAATGATCCTACCAATGAATCGCTGCTTTTTTTTTTGGACATAAAACAAGAGGGGTTTACAATTTAGTGCTGAACAGGCATTGTTTGTTTGTACAG
Seq C2 exon
GAAAAGAAGGAGTTTGAACAGAAATTTTCTAAAGAGCAAGCAGCACTGAGAGAACAGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004881:ENSGALT00000007792:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.769 A=NA C2=0.286
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]