DreINT0073793 @ danRer10
Intron Retention
Gene
ENSDARG00000063197 | golga2
Description
golgin A2 [Source:ZFIN;Acc:ZDB-GENE-081030-1]
Coordinates
chr5:1409812-1409994:-
Coord C1 exon
chr5:1409956-1409994
Coord A exon
chr5:1409875-1409955
Coord C2 exon
chr5:1409812-1409874
Length
81 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TATTGTGTGTTCTCTATCAGGAA
3' ss Score
9.79
Exon sequences
Seq C1 exon
ACGAAGCAGTCTCAGGAGCTCTCAGATCAGCTGCAGAAG
Seq A exon
GTGAGCTGCTCCACAGTCTCATTACACTGGGCTCTTATTAATGAGTAGCTGCGTATTTACGTATTGTGTGTTCTCTATCAG
Seq C2 exon
GAAAGGAAAGAGTTTGAGCAGAAGTTCACTAAGGAGCAGGGAGCGATGCGAGAACAACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063197:ENSDART00000092087:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.863
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGTCTCAGGAGCTCTCAG
R:
TAGTTGTTCTCGCATCGCTCC
Band lengths:
95-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]