HsaINT0070406 @ hg19
Intron Retention
Gene
ENSG00000167110 | GOLGA2
Description
golgin A2 [Source:HGNC Symbol;Acc:4425]
Coordinates
chr9:131028249-131028604:-
Coord C1 exon
chr9:131028566-131028604
Coord A exon
chr9:131028300-131028565
Coord C2 exon
chr9:131028249-131028299
Length
266 bp
Sequences
Splice sites
5' ss Seq
GAAGTAACG
5' ss Score
2.34
3' ss Seq
CTGTCTTCCTCTTCCTATAGGAA
3' ss Score
12.88
Exon sequences
Seq C1 exon
AAACAACAGAACCAAGAAATTACGGATCAGTTGGAAGAA
Seq A exon
GTAACGTGATTTCTTTGTTTGCTCACAACATGACTGCTGGGTTTGGGGGGCATTCAAATGTAGAGGCCTCAGTCTCGTCTCACCCACTCCCAGCCTGGGGAAGAAGGCTCACCCCCCCAGATTCCACCCCATCCCCACAGGGTCCCTGATAACCTGGTCCCATGGGTGGGCCTGTCCTGGGACATTGGTGGCATTCTGGGGGCATGTCCCTTGCTGTGCCGTCTCTGCCTCCCCCTCGTAAGAGCTCTGTCTTCCTCTTCCTATAG
Seq C2 exon
GAAAAGAAAGAATGCCACCAAAAGCAGGGAGCCCTAAGGGAGCAGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167110-GOLGA2:NM_004486:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.830 A=NA C2=0.536
Domain overlap (PFAM):
C1:
PF150351=Rootletin=FE(9.8=100),PF113073=DUF3109=FE(13.5=100)
A:
NA
C2:
PF150351=Rootletin=FE(12.9=100),PF113073=DUF3109=FE(17.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)