BtaINT0002398 @ bosTau6
Intron Retention
Description
Bos taurus golgin A2 (GOLGA2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192195]
Coordinates
chr11:98886465-98886709:-
Coord C1 exon
chr11:98886647-98886709
Coord A exon
chr11:98886559-98886646
Coord C2 exon
chr11:98886465-98886558
Length
88 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GTTTGGCCTTTCTCCCAAAGGTC
3' ss Score
8.86
Exon sequences
Seq C1 exon
GAAAAGAAGGAATTTGAGCAGAAGCTTGCAAAGGAGCAAGGGGCTCTGAGAGAACAGCTCCAG
Seq A exon
GTGAGTGGACTCTTCCAGGGTCCCTTGCGGCCCCCAGGAAACATTGCTTTTGCACATTCTCAGCACTCGTTTGGCCTTTCTCCCAAAG
Seq C2 exon
GTCCACATTCAGACTATCGGAATTTTGGTGTCAGAGAAGACGGAGTTACAGACAGCTCTGGCTCACACCCAGCAGGCAGCCAGGCAGAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011317:ENSBTAT00000015044:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=NA C2=0.438
Domain overlap (PFAM):
C1:
PF0252012=DUF148=PD(10.3=42.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGGAATTTGAGCAGAAGC
R:
CTTTCTGCCTGGCTGCCTG
Band lengths:
151-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development