RnoINT0066274 @ rn6
Intron Retention
Gene
ENSRNOG00000011884 | Golga2
Description
golgin A2 [Source:RGD Symbol;Acc:620282]
Coordinates
chr3:11328163-11328402:+
Coord C1 exon
chr3:11328163-11328225
Coord A exon
chr3:11328226-11328308
Coord C2 exon
chr3:11328309-11328402
Length
83 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TTGTGGCCTTTTCTCCAAAGGTT
3' ss Score
9.68
Exon sequences
Seq C1 exon
GAGAAGAAGGATTATCAGCAGAAGCTGGCAAAGGAGCAGGGTGCCCTCAGGGAACAACTGCAG
Seq A exon
GTGAGAGGTCTGGGCAGTGTCCCTGAGCCCTCTGGAGAGCGCGTTTCTCCTGTCTCTCAGCACTTGTGGCCTTTTCTCCAAAG
Seq C2 exon
GTTCACATTCAGACCATAGGCATCCTGGTGTCTGAGAAGGCAGAATTACAGACAGCTCTGGCCCACACTCAGCAAGCAGCTAGGCAGAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011884:ENSRNOT00000016341:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.524 A=NA C2=0.406
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAAGGATTATCAGCAGAAGC
R:
CTGCTTTCTGCCTAGCTGCTT
Band lengths:
156-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]