GgaINT0124936 @ galGal3
Intron Retention
Gene
ENSGALG00000004881 | GOLGA2
Description
NA
Coordinates
chr17:5635948-5636344:+
Coord C1 exon
chr17:5635948-5636010
Coord A exon
chr17:5636011-5636250
Coord C2 exon
chr17:5636251-5636344
Length
240 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTCCTTTTTCTTTCTCCAAGGTT
3' ss Score
8.94
Exon sequences
Seq C1 exon
GAAAAGAAGGAGTTTGAACAGAAATTTTCTAAAGAGCAAGCAGCACTGAGAGAACAGCTACAG
Seq A exon
GTAAGGCAGAGCTTTCACTACAGTAATATGACCTGGCTGCTGTCCTTGTCTGGATTACTGAGCACTCTGTCTTCATCTTGGAAGCCAACATCCCTTCAGGAGAACTGGGAGAGCCAGTTAGCTAGATTGTACTTAAATGCAAGAGCTCTTTGTCTCACTGGATTATCCCTCTGTGGCAGCAGGGATGTTGTGGTTGCGAGCAGAGATTTCCTGCACTGAGCTCCTTTTTCTTTCTCCAAG
Seq C2 exon
GTTCACATCCAGACGATTGGAATCCTAGTTTCTGAGAAATCTGAGTTGCAGACAGCCCTTGGACATACTCAACAAGCTGCACGGCAGAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004881:ENSGALT00000039860:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.298 A=NA C2=0.438
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAAGAAGGAGTTTGAACAGAAATT
R:
GCCGTGCAGCTTGTTGAGTAT
Band lengths:
148-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]