DreINT0073794 @ danRer10
Intron Retention
Gene
ENSDARG00000063197 | golga2
Description
golgin A2 [Source:ZFIN;Acc:ZDB-GENE-081030-1]
Coordinates
chr5:1407503-1409874:-
Coord C1 exon
chr5:1409812-1409874
Coord A exon
chr5:1407597-1409811
Coord C2 exon
chr5:1407503-1407596
Length
2215 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
3' ss Seq
TGTCATTTCTCCACATTCAGGTC
3' ss Score
9.77
Exon sequences
Seq C1 exon
GAAAGGAAAGAGTTTGAGCAGAAGTTCACTAAGGAGCAGGGAGCGATGCGAGAACAACTACAG
Seq A exon
GTGAACACTAAACACTGTAGTCTCATTTATTGCTTTGTCACGATTCTTAAATAACCATCTAATTAAGGTTATTTAATCTTATAGTGTTTGTTTCAGATGACAGTGATTCTGCAGGTCTTTAATGACCACAAGGGGGAGACAATACTGTGATTTATAATTCTGAGTTTAAAATATACAGCATAATATATTTGTAAGAAGATTTTTAGTTGTGTCATTATTCTATCTTCATTCATTTGGGCTAAATGTTTAGGATTCATTATTAGTAAATTAATTATGTGTCGACTCTGTTATATTTATTATATATATATGTTAATATCTGTGATATTTCAGTCCATTCGCTTTTTTAAAAATATATTATGATGTAAATGCATAAAATAGAATTTTAGACATGCCACATCCTTAATTTATTCTCTTAAAAAACTGGGAAATACCTATTAAGTGTCATATAGCCTAGGGAAAATGTATGTTTGAGGTCCCTCCAGAGCATTTAGGCTGAATGTTTGATGATGTGTACCGAAACAAGGATGTTATAAAGACCTTTTATACAGACTTATTAACGTATAAATTCTGTGGTTTTATATTATGGATGGTGTGCTGGGTCATCTCTCCATTAGTGGCAGGACCACTTGACGCATGATGCCAACAGTGGGTCGGCGAGTAAACGAATATAATTAATGAAATGCACAGGCCTGTGCGTGTAGACATATAATGTAATGCTGCACAGTAACATGTCATTTGTTTGTTTCGGTTGTCTACATTTTAATTGATGCGAGGGTGTGCTTTGTCTGCCTGATTCCCGCTGAACTGGGCGGGTTGTGTGACGTTTGATTTTCGGGGTTTGCGTGCTGCGCTGCGAGTTATTAGCCTGACAGTGGAAATGCGTCATGATTTCGCCCACACTTCTCAACCTCCCGGGCGATTAGTCTGGCCCGGCCTGATAAAAGTCCTGGCTCGCACTGGCCCGACAGTGGAAATGCTGCTAATGATGGAAAAGTATGGAACAAAATCAATGCAAAAAGTATTGAATTAAAAAGCATATCGAATTATGAAAAAAATAATAGACGGAATTAACAAGTTCTTACATTTTTAAGGCTTGAATTCCAGGTTTTGTATTTTTAGGTGCTGAAATTTAACATATCCGTTTATTTAAGCTGTGAATATTTAATCTGAAAATATTTCAAACACGTTTTTATAGTTTATAAATTCAATAATTTATATTAAATTTCCAAATTTCACATACAAAATACTCTTTAAAAATATGATGTATAATATTCAAAAGGCAATTTTCAGTGCATTTGATTTCGGTTCAAATATTCGCTTCCATAAATTCAGTGGCTCAAATTCAAATGTTAAAATTAGACATTACATCCGGGAACTGCAGGAAAAGCAATAGATTGCAGATTGAAGATCGCCAGCTGCTTTTTCACCAGCAGGTGGAGATGGAATAATTTCAGATTTTTAACCCAGTTAATAGGCAGAAAAAAAGCTAATTAAGGCACAAAAGTTTTTAATATTAGTTTAAAAAGCATTTAATATTAATATCAATGTTTCGGACATTATAAGTAATAAATTGAGTATGAGTAAAATAAGTAAATGATGTTTTGGTCATTTATATTTGCCCTTCCATAGTTTGTTCCATAGAAAATAACTAAACCCCGCCTCCTACTTAATATTCAGTTTCAGTTGTAAATATGTCATCATATTAAAATAAACCCCGCCCGCTACTCAATTAACTTTGTTAGTAGTTTACAAAGTTTAACCTTTGAGTTAAGCAGAAATTAGTCATGAATTAAATGTCCCCTGTCATGTTTAAGCATTTCACATTAGATAACAGTAATAATGTGTTCAGTTTACTGTGAATCATACCAGTTTAAAGAAAGCAATGCAAAAAGCTTAAATTGTACAATTCTGGAATGAGGCATTATTGTGCAATAATAATCCTGAAACGAACGTACAATTTAATAAAAACTAAAAAATATTATCTTTATCATTAATAGTATTTGGCTGATGAGTAAATGTGTGTATATATAGTGTAACATATCAATAATAATCCTGAAATAAACACGTGCAATTTGATTTCTTCCTAACAAGATATTCACACATTTAAAAATCTTCAAACATGGTGGAAAGAAAAGTTTTAATACAGCATTAATTGAAAAAACAAGGTGATGTGATGAAGCTGTGTTGTAATGCTGTGTCATTTCTCCACATTCAG
Seq C2 exon
GTCCACATTCAGACCATCGGCATCCTGGTGTCTGAGAAATCAGAGCTGCAGACGGCCCTGTCTTACACACAGCAGGCAGCGCGGCAGAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063197:ENSDART00000092087:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.863 A=NA C2=0.406
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]