BtaINT0002548 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MX34]
Coordinates
chr18:60076819-60077406:-
Coord C1 exon
chr18:60077265-60077406
Coord A exon
chr18:60076860-60077264
Coord C2 exon
chr18:60076819-60076859
Length
405 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
GAGAAGTATTTTTCTGTCGGTTT
3' ss Score
-5.56
Exon sequences
Seq C1 exon
GTGTTTTCATTTCAGGCACAGTTGACCTTCAAGGATGTGTTCATAGATTTCACTCCCGAGGAGTGGGAATGCCTGGACCCTGCCCAGAGGACCTTGTACAAGGATGTGATGGTGGAGACCCTCGGGAACCTGCTGTCTGTGG
Seq A exon
GTGAGGATCACTTCCCTCTGAAGTGGGGATCTGCCCTGGGGTACCTCTGCATGTTCCCTCTTTACCTTTTGAGATCTCCCGTTTTTCTTGACTAAGCTCAAAACCTTGTTGACTCACACATGTAAAGCTTCCTGATTGGCATCAGGAGTTTAAACTTGTCTTTCCTTCAGGTGACCTGCCCACTGTGTGATGCACAAGGAGTTTCTCCACAGCTTGAGTGTTTATAAAGCTGATTTCAAACTTTGAAATATCCAGTTGCCTGTTTTCTAGCCCTGTGTTCTTGGTTCAGTAGTTCTTAGATAGGAACTAGATACCTGCTGCATGTTGTACTGTATATTATACTGTTCCCTGTGCATTCAGAAGGAGACAGATAGTAAATTCATTTGAGAAGTATTTTTCTGTCGG
Seq C2 exon
TTTATAATATCCTCACTCCTTGGCTGACAAAAGAACTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011844:ENSBTAT00000028697:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=85.4)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTTTCATTTCAGGCACAGT
R:
TGCAGTTCTTTTGTCAGCCAA
Band lengths:
182-587
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development