BtaINT0004438 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MEU8]
Coordinates
chr26:16138284-16139782:+
Coord C1 exon
chr26:16138284-16138444
Coord A exon
chr26:16138445-16139605
Coord C2 exon
chr26:16139606-16139782
Length
1161 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGAACATTTTTTTTTTCTAGCTC
3' ss Score
9.03
Exon sequences
Seq C1 exon
GGTTGCCCTGTGATCCTACTTTCATCCTGGGCTGTGCTCCCTGCAATGTGATCTGCTCCATTATTTTCCAGAATCATTTTGATTATAAAGATCAGATTTTTCTAGATCTAATGGAAAGACTGAATGAAAACGCCAGAATTCTGGGCTCTCCATGGATTCAG
Seq A exon
GTGAGGCCAAAGTCCTTTCTTCTCAAGAAATCATTTTGGCTCTTTTCTCCATGAGATCCAGATCTCTCTGGGCACCAAGCTATGAGGTGAATGTGAACAGCACACTCCTGCCCAAAGCTTAGCATCATGGCGTACTCATCTGGGGATGACGGCAGAGCCTGTAATGATAGACAGGAAAATACATGCCCAGAATACAGAACTGCAATTCAGTCCCATTGGCTCTGTTCAGTGGTTTTTCCAGCAAGATGCAAAGACCAATTTCTGTAAACTACTTGGTAATTTCCCCAAAGTGTGACCACAGAAGTAGGACTTCAAGGTCCTACTGGAAAGGCTTTCATTGCCCACAAGTCTTGTTACCCAATCTCTACTCATGGATTCTTCAGCATGTTAGCTGACAGAAATATCTGTTTGGGAAGAAAGACAGTATTTCCTTCAAGGGGCTCCCACAGGACACTGAATATGATAGGAGAGTTTGATGCTTCAGTTGGTATCTTAACTGACAAAATAATTGCTTTGAGGATGACAAAATGATTATTTTTTAGTGTAGGAACCACAAACCAACATCACTGGTGTACCCTGTGCTGAGCTAAATGTTCTGCCCCCTGCCTAAAAGACAATGGTGTGACCGTACAGAGGTCACTTAATTGCTCTGGTTTCCAGTTACTTCATCCATAAAATGTTGAGTTGCGTTTCATGGTATCTTTAGGACCCTTTTAGTCCTAAAATACCAATTTTATGGTTGATGCCACTAAACAGAGAAAGAGATATCAGGGATCAGCTTGTTTTCTATATCAGATTACCTAAACTCCCAGTCTGATGTCATCTATAAAAGATGAACCATTGTGTTTCGTGCTATCTCTTATTACATAATTGTGGGGAGAATTAATGCAGAAAATGAAAGAATTGATACAAAGATGCCTTTGTACTGTAAACATGATGTATGAGTATAGGAGATGAATACCATCATTGATCCCTGGTTATAATTTTCTCCCGAAATACATCTATCAGCATAGAAAACTATGTATTTGTGAAGTTAAAAAGTCCCATCTATATAGTGACCATATTATTTTAATATTAAAATACATTTTCTAACCAGGACTTGGCATATAATATTTGAATCTTCATTAAGTGTTTCTTTTAATGAACATTTTTTTTTTCTAG
Seq C2 exon
CTCTGCAGTTCTTTCCCTGCTCTCATTGATTATGTCCCAGGGAAACATAAAAAATTCTTTGAAAATTATGCTTGTATGAAAAGTTATGTTTTGGAGAAAACAAGGGAACACCAAGCATCCCTGGACATGAACAACCCTCGGGACTTTATTGATTGTTTCCTGACCAAGATGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020375:ENSBTAT00000008918:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.4=100)
A:
NA
C2:
PF0006717=p450=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGCCCTGTGATCCTACTT
R:
TGTTCCATCTTGGTCAGGAAACA
Band lengths:
337-1498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]