MmuINT0044841 @ mm10
Intron Retention
Gene
ENSMUSG00000042248 | Cyp2c37
Description
cytochrome P450, family 2. subfamily c, polypeptide 37 [Source:MGI Symbol;Acc:MGI:1306806]
Coordinates
chr19:39994450-39995888:+
Coord C1 exon
chr19:39994450-39994610
Coord A exon
chr19:39994611-39995711
Coord C2 exon
chr19:39995712-39995888
Length
1101 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
3' ss Seq
AACTCTTGAATTCCCTATAGATT
3' ss Score
6.65
Exon sequences
Seq C1 exon
GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCTTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAACTTGATGGAAAAACTGAATGAAATAACAAAGATTCTGAGCAGCCCTTGGTTGCAG
Seq A exon
GTGAAGTCATGATTCCTTGATTCTGAGAACACACTTTGCTCTTTCTTACTCGTGAGTCACACTGAACAAGGACCGAGTAGTGAGGTGACCAGACATCACAGTTCTGACTAACGTATTATGGAACTAATATTTGGAAGCAAGTTCTAAACCTCTTGCTATACAAATGGAAAACCAGAAGGGGCAATGCCAAGATAGCTTTGGCCTGCTTACTAACACCCTATCCTTTGATTTCCCTATTAACTTCCCCACAAATCTTTTGATTAAGTACTGTATTCACTTCTAGAAAGTTGGCAAGTCACTCTTAGGACATTCTTCTACTATGTAAATTTATTGGCCTCTTTTCAACAATTACACACATCTTCATCATATTACCAGCAAGGAATATCTTAGTACAGAAAGACTATTCTCTTAAAGAGAAAGAATATGGGTGGCAATGAAAGCTGCCAAGAAGCAGTTACTTCAGTGGCTTGGTGCATAAGCAAGAACTCTAGTTTACAGGGTAAGAGGAAGAAGTTACAAGGTGCATGATTTCATTCTGTGTGGATCATAAGCATCCTCCCAGAATTGTCTTATGCTGAACTAGCCTTTCATGAAAACTGAATAAAGAATGGCTGTATGGAAAACCCCACACAGGTTTTGGTATATAATTTATTTTATGGAATAAACTCTTTTGTGTAAAAAGCTGCTTGGTAAGAATAAAATCTTCAGGTATCAAATTTCTTCTGTAAATCCAGTCACCCAGACATCTTAAGTTCTTCTGTAGAGTATGAGTGTAAGTAACTTGCATATGTGGTATTTCAAACACGAGATTAGAGTTCTTGGAGCTATCAAAGAAGAGACATGAACATATTTTGCACAAAAAAGATATGTGAGTGTGAAATTTTTTGCTATGTTCTTTGGTCATTTGGGTAGCAATTTCTCCCTCATATTTCTCTATTAGAATAGAGAATTGGGATGTATGAAAAAAAATTACCTATGTAAGATGAATTAAAGTACATATTTTGATCTACCAATGCCAATAAATCATGTGGTATGATATAAATATACTTTAGTTACGTCATTACAATGTATTCATTTAGTAAACTCTTGAATTCCCTATAG
Seq C2 exon
ATTTGCAATACATATCCTGCTCTGCTTGATTATTGTCCAGGAAGTCATAAACAATTTTTTAAAAATTATGCTTCTATTAAAAATTTCCTTTTGGAGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAATTCCTCGTGACTTTATTGATTATTTCCTAATTAATGGAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042248:ENSMUST00000049178:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
NA
C2:
PF0006717=p450=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTGTGATCCCACCTTCAT
R:
CTGGCCTCCATTAATTAGGAAATAAT
Band lengths:
334-1435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types