BtaINT0004512 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MKJ3]
Coordinates
chr22:44251814-44252311:+
Coord C1 exon
chr22:44251814-44251934
Coord A exon
chr22:44251935-44252018
Coord C2 exon
chr22:44252019-44252311
Length
84 bp
Sequences
Splice sites
5' ss Seq
TCGGTATGA
5' ss Score
7.72
3' ss Seq
AAGCTTTTGTATTTGTATGGTTT
3' ss Score
-4.57
Exon sequences
Seq C1 exon
GTTCTTGCTGCTACTTCTTTAACAGGTTTACTGGAAAAACTGCAGAACTGCAATGAACTTTTGGAGAAAATTATGAAAGGCCTTAACGCATATCTTGAAAAAAACGACTTTTCTTCCCTCG
Seq A exon
GTATGATGAATAATCAATTGTGCTATCATTAAAGCATTTTCTGAGGTGCAATGAATTATAACTAAAGCTTTTGTATTTGTATGG
Seq C2 exon
TTTTCCCTAGTTTTTTCTTCTTATCTAATGATGAAATGCTAGAGATTCTGTCAGAGACCAAAGATCCACTTAGAGTTCAGCCTCACTTGAAAAAATGCTTTGAAGGCATCGCCAAATTGGAGTTCCTTCCCAATTTGGATATTAAGGCCATGTATAGCTCTGAAGGTGAGCGAGTGGAGCTGATTGCACTAATTTCCACATCTGCAGCTCGAGGTGCCGTGGAAAAGTGGCTCATTCAAGTAGAAGATTTGATGCTTCGAAGTATTCATGATGTGATCGCGGCAGCCAGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020802:ENSBTAT00000013592:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(9.6=100)
A:
NA
C2:
PF083938=DHC_N2=FE(23.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCTTAACGCATATCTTGA
R:
GGAACTCCAATTTGGCGATGC
Band lengths:
170-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]