MmuINT1008753 @ mm10
Intron Retention
Gene
ENSMUSG00000021879 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:MGI Symbol;Acc:MGI:107720]
Coordinates
chr14:26766072-26766572:+
Coord C1 exon
chr14:26766072-26766193
Coord A exon
chr14:26766194-26766289
Coord C2 exon
chr14:26766290-26766572
Length
96 bp
Sequences
Splice sites
5' ss Seq
CCGGTATGG
5' ss Score
8.44
3' ss Seq
TTCCTATGTTTCTTTTCTAGCTT
3' ss Score
10.62
Exon sequences
Seq C1 exon
GTGCTTGCTGCTACTTCTTTAACAGGCTTGTTGGAAAAACTACAGAATTGCAATGACCTTTTGGAGAAAATCATGAAAGGACTGAATGCGTACCTTGAGAAGAAGCGTCTTTTCTTCCCCCG
Seq A exon
GTATGGTAGATGATCAACCGTGCTATCACTGAACACATCTTCTGTTGTGTGATGAGTTGCCATTAAGGGTTTTTTATTCCTATGTTTCTTTTCTAG
Seq C2 exon
CTTTTTCTTTTTATCTAATGATGAAATGCTAGAGATTTTGTCAGAGACCAAAGATCCACTCAGAGTTCAGCCACACTTAAAAAAATGCTTTGAGGGCATCGCTAAGTTGGAGTTCCTGGCTAATCTGGATATTAAAGCCATGTATAGCTCTGAGGGTGAGCGAGTGGAGCTGATTGCTCTGATCTCCACGACTGCAGCGAGGGGCGCTGTAGAGAAATGGCTCATTCAAGTAGAAGACCTAATGCTCAGAAGTATTCGTGATGTGATTGCTGCCTCCAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021879:ENSMUST00000022433:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(9.0=100)
A:
NA
C2:
PF083938=DHC_N2=FE(21.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCGTCTTTTCTTCCCCCG
R:
CACCCTCAGAGCTATACATGGC
Band lengths:
179-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types