DreINT0058048 @ danRer10
Intron Retention
Gene
ENSDARG00000059987 | dnah12
Description
dynein, axonemal, heavy chain 12 [Source:ZFIN;Acc:ZDB-GENE-090311-9]
Coordinates
chr23:19619240-19620608:-
Coord C1 exon
chr23:19620487-19620608
Coord A exon
chr23:19619535-19620486
Coord C2 exon
chr23:19619240-19619534
Length
952 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTA
5' ss Score
7.04
3' ss Seq
TACATCATTTATATCATGATTTT
3' ss Score
-20.3
Exon sequences
Seq C1 exon
ATTTTAGCTGCAACCTCTCTTCCTGGCTTGTTTGAGAAACTGCAAGAGTCCTACAATCTCCTTGAGAACATTATGAAGGGCCTGAATGCATACCTTGAAAAGAAAAGATTGTTCTTTCCAAG
Seq A exon
GTATTATATTTAAAGATGTTTCAGGCAAAAGTTTTCTTTTTTACAATGTTACAATAAGCCATTATAGATAGAATTTTCTGAAAGATTTAACGTGTTGTGTTTAAAATTGCATATTTCTCCACTATTTAGTATGTTAGAAACATTATGTGAGTGTATCCAAATTTATAGTCTTACACATATATGTATGAGTTGTACATATAATGGAATTTTTTTTGAGAGTTTTGATGAGTGGAATAGAAGTGACAAAACTGACCCCAATAGGTCATATGAAAATAAACACATTGTAGATAATTCATCCAAATTTCATACCATATTAATACCACATGGAAGAAATGTTATACCCGTTGTACAGTAAGTCAAATGTAGTAAACAGACAGTATGTGATTTCAAACTCACCAATGCTGGACACATTAGCAAGTCTTTTTTTTATTAATGGCAGACAGAAGTTTTGCCTAGGTAGGTTTAAAGATGTCATTACATTTCTGAAGCTACACTCTTGCTACATTCTTAAAATGTAATTCAATTAATTATTTATAAAACACAATATTCACAGTTTAAATTGAAACTTTGAATTCACTTTATTTTATTTTGTTGGTTTTGTTATTGCTGTTATTATCTTTAGAGTTTTTGCCTTTATGTATTTTTTATCTACTTTTTATTTGTTTTATTCTAAGGTGTTTCAAGTACAACAGAACAAACAAACAACACTGTCTGAGAATATTTAGCCAATATTTAAAATTTTAAATGCTTTATATTGCTTTATATGTTTTTGAAGTGTTTTTGTTAAATAAATTACAATTAATTTATTTTTTATTATTATTATTTTTAATAATGTTTCAAACTTACTTATTTCACTTATTTCCCAAAGCCATCTTTCTAAGTCAAGCTTTTTAATGCTTTGTTAACAACAAGTTTAAACATTAAAATCAACCTACATCATTTATATCATGAT
Seq C2 exon
TTTTTCACACAGATTCTTTTTCCTATCAAATGACGAGATGCTGGAGATTCTCTCAGAAACCAAAGATCCCACGCGAGTGCAGCCACACTTGAAGAAATGCTTTGAGGGCATTGCCAAACTGGACTTCCTGCCCAATCTGGACATCCAAGCCATGTACAGCAGCGAGGGTGAGCGTGTGGAGTTCATCCAGCTCATCTCAACTTCTGAAGCACGAGGAGCTGTGGAGAAGTGGCTGGTGCAGGTGGAGGACATAATGCTGAGAAGCATCAGAGATGTGATCAATCGCTCCAGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059987:ENSDART00000134012:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.010
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(9.0=100)
A:
NA
C2:
PF083938=DHC_N2=FE(21.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGGCCTGAATGCATACC
R:
GCCTGGAGCGATTGATCACAT
Band lengths:
342-1294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]