GgaINT0021576 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NQR9]
Coordinates
chr12:8684526-8685086:-
Coord C1 exon
chr12:8684965-8685086
Coord A exon
chr12:8684809-8684964
Coord C2 exon
chr12:8684526-8684808
Length
156 bp
Sequences
Splice sites
5' ss Seq
CCGGTATGA
5' ss Score
8.14
3' ss Seq
TTTTCTAAATCTTTTTCTAGCTT
3' ss Score
7.92
Exon sequences
Seq C1 exon
GTTCTTGCCGCTACTTCCTTGGAGGGGATGTTGGAGAAGCTTCAGAACTGTAATGAGTTTCTTGACAAAATCATGAAAGGGCTTAATGCTTATCTTGAGAAAAAGCGTCTCTTCTTTCCCCG
Seq A exon
GTATGATGCTCTTAGGCTATTTCAAAAACAAAAATTCCAAACATTAATTTGGTTGTTTAATAAGGTCAGCCCTTAAAGTATCTGGTAATTCAGTTACCTTTTTATTCCTTTTCTTTTTTTAAAAAAACTTTTGCTCTTTTCTAAATCTTTTTCTAG
Seq C2 exon
CTTCTTTTTCTTGTCTAATGATGAAATGCTGGAGATCCTGTCAGAGACCAAAGATCCTCTCAGAGTTCAGCCTCACTTGAAGAAGTGTTTTGAAGGCATTGCAAAGCTACATTTCCTTCCCAATCTGGATATAAAAGCAATGTACAGTTCTGAAGGCGAGCGTGTTGAATTTATTTCAACAATTTCTACTTCTGAAGCTCGAGGCGCAGTGGAGAAGTGGTTGATTCAAGTAGAAGATATTATGCTGAAGAGCATACACAATGTTATTGCTAAATCAAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005601:ENSGALT00000008986:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(9.7=100)
A:
NA
C2:
PF083938=DHC_N2=FE(22.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCGTCTCTTCTTTCCCCG
R:
ATCAACCACTTCTCCACTGCG
Band lengths:
246-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]