BtaINT0004521 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MKJ3]
Coordinates
chr22:44261949-44268624:+
Coord C1 exon
chr22:44261949-44262068
Coord A exon
chr22:44262069-44268514
Coord C2 exon
chr22:44268515-44268624
Length
6446 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
CCATTTTTCTTTTCTTTTAGGAA
3' ss Score
12.51
Exon sequences
Seq C1 exon
CTTCTTCGATCAATTAAAGATGTAAATGAACCAAAGTTTTTATCACATGATATACCCTTATTTAATGGAATAACTAGTGACTTATTTCCTGGTGTTAAACTTCCTGAAGCCGACTATCAT
Seq A exon
GTAAGTAAACCTCTGAGAGTGACTTGTTCTTCAAATAAATTCATCTGGTGACTCAGTAGTTTTTTGAGTTTTATTAAATGAGTGAATTATTCTATTAGGAATATAAACCTCTATTTTGGCCACTCTGATTAATAAAGAAGAGTAAATTTTAGTGTGTGTGCTCAGTTGTTCGGTCGTGTCTGACTCTTTGCAATCCCATGGACTATAGCGTACCACGCTCCTCTATCCATGGGATTTCCCAGGCAACAGTACTAGAGTAGGATGCCATGCCCTTATCCAGGGAAATTTTAGTACTTTATTATGATACCAGGATTAACAAGTTTCAGGTCAAAGATAATGTTACCTATAAAAGAAACACATTTTATTTCCTGTATTCTTATCTTGTGATTTATAATATTTACTACTAAATATACCTCCCTGGTGGCTCAGATTGTAAAGAATCTGCCTGCAATGCAGGAAACCCGGGTTCGATCCCTGGGTCAGGAAGATTCCCTGGAGAAGGGAATGGCTCCCCACTCCAGTATTCTTATCTGGAGAATTCTATGGACAGAGGAACCTGTAGGGTTACAGTCCATGGGTTTGTGAAGAATTGGACACGACTGAGCGATTAACAGAATGTCAATCTCAACCCGATAAATGTGTCTCTTAGTTTTTCAGGGTTCTCTGAGAAACTGCCAGATTTCTCCTTGTAGGTTTCTAGGTCCCCCAGTGAGAAGGGGGCATGCACTCCAGTGTTCCCTCTGTTCCCATCAGTTACCTCCCGGAGAGGATAAAAGCCTGGTTGGGCAAAAGTGGGGGCTAACTTTGCACCTGATTGGAGCACCACTGGGGAAAGCAATGGTGCTTGTTAACCCTGGTATCATATAACATAAAGTACTAAAATTTCCCTGGAGAAGGGCATGGCATCCTACTGGGGTAACTGATTTGGGGGTTTCTATTTTGACAGGGTAAGGTGAGGGGACAAAAGCTGAAGAAGATGGTGAGAGGAAGAAACGGAGTTTGAAAGAGGGAGTCCATGAGAAGATGTAGCTCCAAATCTTTTGGGGGCAACACAGAAATAGAGGCTTAACACAAACAAGACTGACTCAGACTTTTTTCTTCCGTAATTTAATTTTATACTGGAGTATAGTTGATTTACACTGTTGTGTTAGGTTCAGGTCTACAGCTAGGGCTTTCCACATGCTGCTAGTGGCAAAGAACCCCCCTGCCAGTGCAGGAGACACAGGAGATGCAGGTTCGATTCCTGGGTCTGGAAGGTCCCCTGGAGAAGGAAATGCCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTGGCAGACCACAGTCCATAGGGTCGCAAGGAGTCTGACGCAACTGAAGAAACTTAGCATGCATATGTACAGCTAAGTGATTCAGTTATATATGGATACGTATATCCGTTCTTTTTCAGAGTCCCTTCCCATATACTTTATTACAGAATATTGAGGAGAGATCCCTGTCTACATATTAGTTGGTCCCTCTTGCTCATCTATTTTATATAAAGTAGTGTCTAAAGTTAATCACAAATCCTAAATGATCCCTCACCTCCACGTGTCTCTCTCACTTGCCCCTTGAAACCACAAGTCTACTTTCCAAGTCTGTGACTCTGTTGTTATTTTGCAAAGAAGTTCATTTCTATCATGCATTTTTTTTGAAGGATCCACATAAAAGAGATATCACATGATATTTGCCATTCTCTGTCTGATATTTGCCATTCTCCTTCACCTAGTGTGACCATCTCTATATCCTTCCATCTTGGGGCAATGACATGATTTCATTCTTTTTTAAGGCCAAATAATATTCCATTAAATATATGGACCACATCTTTATCCATTCAGAGTTTGGTAGACATTTAAGATGCTTTGGTGTCTTGGTTATTCTACATAATGTTGCAGTGAGTTTTGGGGTGTGTGTACCTTTTTGAACTATGGTTTTCTCAGGGTATTCTCCCAGAATTGGGATTGCCAGATCAAATGATACCTTTGTTTTTCCTTCTTGAAGGAACCAAAATACTGTACTTCACAGCACTACCAATTTGCATTCCTTCCAGCAGTGTACAAAGGTTGCATATTCTCCGTGCCCTCTCCAGCATTTGCTGTTTGGAAACTTTCTGATGGCCATTCTAACTGGAGTCAGTTGATAACTCGTTGCAGATTTTAATTTGCAATTGTCTAATAATTGGCTTTTCATTGGCTTTTTTCATAACAACAGTATAAATAAAATATACCTCTTGAATTTTCTTCTTGAAAGCCAGCCCATTCAAAAATTCTTTTTCCATGATCTTTGTGAGGACATTTCTTCAGGGCAGGTATTATTTCTTTGCAGCAATGCAAATCTTGTGGATGTTAACTATGATAGCAACAGGGAGTCAAGTTGCTGTTATGAGAAAGGGCCACAAGATGGGAGTACTTCCCCATTCCCAATCTGGAAAATAGACTGAGCCTTTTAGACAAAGTCATGTTCCTGATGGTAAATGAGAACGGAGCGGGGGCGGGGGAGGGGGGAGGAGAACAAAGACTCAAGGGCTTGTGTCTCTTTACCTCTGCCCCTCTTCCTTACCTATTCGCCTCCTCCCACCCCTCTCAGCCAAAGCCCAAGCCCTGAAAAAGCATTTTGCCAAGAGTATTAGGGTCAGTAGGTAGGGTGACTCTAAGCAAACTGGCTTTACCTGGGACCACACCACGAGGAGCTCTGGAGGGCCAAGGTTCTGAGAGATCTTCCTGGCATGCTGCTCCACTGTCCTTTGGAGGCATGAGTCTTGGCTTACCTGAAAAGGGCCCACCTGCATGCCGAAGCAGTGGTTTTATTCAGAGGGACCCGGCACTTTTGGTAGAAGTGGGGATCATTTGCTGGCATGACCTCCTGAGCAGCCTCAAACTCACACCACTCCTGCTTTGGGAGCCGAGTCTACTCAGGTCTAAGAAACCAGCCTGGGTGACTCAGGTCCAGGAGAATAGAATAGACATTTTTTGCTCTTATGACTGTTTTGTTTGTTTGGATGGTCTGTTGCAGTGGAGTTGACATGCATCGTTCTCTTTGCAGTGGAGTTGACATGCATCGTTCTCTTTGAGTTCTTCACCTCCTTGATTCACTTCTACATAGGCCTGTACCTATAATTTTCAGATTCTCATCCCATGATGGTATTGCAGAGTGTTGAGTTAAATTTCCTGGGCCCTTCTGTGGGTCTTCGGCTATGATATATTTTTATGTGCATTTCCAGTAGTTTGGGGCCTCCTCATTGATCCTGCTCCCTGCTTCCCCCTGCCAACCTCCCCATCTATGCCTTGGCAATGGTATGTTTCATGTGTAAGCCCGTGAGCCTGATTTTTGTGTGGGACACTAATGGGTTTCGATCATGTTTTAGATATCACTTGTAAGTGAAATCAGTCATACTTGTGTTCTGTCTGCCTCACTGGACTTGGTGTGAGCCTCTTCTGGTCCATTGAGTTGCTTAAAACAGCACAATTTTCATTGTGTTTCTGGGCTGAGTGACTGTCCACTGAGTATGGGTGGCATGCTTTCTTTCTCTGTTCATCTGTCCTCAGACACTTGGGTCGTTTCTCTGCCTTGGCTATTGTAAATAATGCAGACACGACCATTACAGTGCCTGTGACTTTTGCAAGGATGTTTTTCGCTGGGTATCCTTCCGGGAAGAGATACACGATCTTGTGGTAGCTCCGTTTTTCTTTTCTTAAATAAACATCCACACTGTTCTCCAGAGTGACTGTTGCCAGTTTACAGTCCCACCTCAGCATTGGAGAGTTCCCTATTCTTTCCCAACTCCACTCCCCAGACCCGGGGAGCCTTTTTCGAAGTGTTGATTTTGTAATGATTGCTGCCAGAGGATGCCTGTGTGTCTTTGTCTTGGGGTCTTTCTCCTCCTTAGAGATCCTGAGCATTTTCATTCAGGTGATTTTTCTCTGTGACAAAGAGAATGTGGCTGTTGAAATATGCACGTGGAGGGTCAGCTCTGTTTTGAGTTAGGTTTTCATTAGGTGCCTCATTAGGACCTTTCTTGGTGGGGGAGGTATCTGCATCCCCAATCCTGTGAACCTGAAGTACTCTGCGGCCATGTCTTCTCATTGCAGTTCCAGAAAATGTCCACAAGGCGGCAGCACTTCCTCATGCCCCACTTGTTCACTGGGCCATCCTTCCTGGGTTTTCAAGGAGAGTGGAAGGTGCCCAAGAGCTTGTGTCTCTTTACCTCTGACCCTCTTCCTCTACCCCTTCGCCTCCTCCCGACCACCTCAGTCAAACCCCAAGCCCTGCAAAAGTGTTATGCTGAGGGTCCTGAGTGTCAGTTGGTGGGGCGACTGTAAGCAAGCTGGCTGTAATCAGGGACCAGAGCCCCCCTGGAGCCCTGAAGCCCTACGCCTCTCAGAGCTCTTCCAGGCACGCCTCTCCACGTCCTTTGGCGGCTTGAGGCTCGGCTTAGGTGAAAAGGCCCCACCTGCATCCTGCGGTGGTGGTTTCATTCAGAGGGCACCCCTGGCCAAGTTCTGATGGAAGCGGGGCTCATTTGCTGGCACGTCCTCCTGAGCAGCCTCAATCCCACTCCAGTCCTGCTTTGGGAGCGGACTCTGCTCAGGTCTAGGGTTGGTCCAGGTCCCAGGGGAATTGCTATGGTTAGACGTCCACTATTTTTTCTTATTTGTGTCTGCTGAATGTACTGTGTTCTTTCTCCTTTGGTTGTTTTAAATGTTTTCTTTGTTTCCGTTCTTGACTCTGTGCCAAATCTTGTTCATTTTGTACTTATCCTGCTTGGTATTTGCTGCACTTCTGCTACCTGCATATTACTTTCTTTCTCCAGAAAATTCGTATTGTCTTTTAAAGTATTTCTTCTACCCAATTTTCTCTCCCCTGGGGCTCTAGTTACATGAATTAATATTTTTGACTATTTTATATTGTCTCACATGTCTCTTATGATCTATTTCTGTTTTTTCATTGCTTTTATTATCTGTGCTTTAGTTTGGATACTTTTATTGACTTGTCTTTAAGATTCATGATCCTTTCTTTGCCTTTGTTCAGTCTACCAATAAGCCTCTCCAATGGACCATTAATTTTATCAATTTTATTTTTTTCAGCTTTATTTTATCCAGTTTGACTTTATTTCTTTGCTTAAATTCTTCATCTTTTCATCTATTTTTGTAATATTGTCTATGTTCTTTTATACATTTATAAAAGTCATTTTATTTTTTTGTCAGCTAATTACGACACCTGAGTCATCTGTGAGTTATTTTATTTACTATGTTTTTTTCCCCCTACTGATCAACAGCTATTTTTTCTTATGACTGTTGAAAATTGAGTAGAAAGTAAGAGGGTGAACTGGTAGTATTTTCCTGTAGGAAAACCATGTTTTTTTCCTTTGTAAGATGGCTAGGTTGAGCTGCTGATCTTTTCAACCAAGAGTTGACCTGAGCCAGAGTCTTGTTGCACAAGTATTGATCATTAGTCTATCTCTGATTTCAAATGTCTTTAGAGTGAGAATTGTCCTAATCTATGATAGGATCCTTCCTCTAGCAGCATTTTGGGATAAAAACATCCAAAGAAGACTAAGAAAATCTCTTTCTGTGGGGGGTTTGTAGCTAAGTCCTTGATTTCTTGTGTCAGTTCACACTCAGCAAAAGCATAGGCAGTGGAAAAACCAGCTTTATATTTGAAGCTCCTCCAGATTTATATGTCGCAGGAGCCTACATGGTCATTAAAATATCTGTCAATTTCCCCTTACTTCAGCAAACTCCCTCTGCAGTATAGCAGGTCAGACCAATGCCTACCTGTCTGTACTTGCTTCTATAAGTAAAACTAGCAGCTGGTCTGTGTGAAAGGCTCATCCCTTTCTGAAATTTAGTTCCTTTAGACTTGTGCTCAGTGCTCAGTTGCTCAGTTGTGGCCAACTCTTTGCAACCCCTTGGACTGTAGCCCACCAGGCTTCTCTGTCAGTGGAATTTTCTAGGCAGGAATATTGGAATGGTTTGCCATTTCTGAAATTTAGTTCCTTTAGACTTACGTGTATCTAAAATGCTCCTGTGTGTTTACAGTTTTTATAATTTTTGTAACCTCTGTGTGTTTCTATTTACCATAGTGTGAAGGATTGTTTGGCATGTCCTTCTATATCCTAATCAAAAGTGAAATTCTGGAAAAACTAATAAGACAAGTTGTTTTCATGAAGCATACACCCAGTGCTATGATGCCATGATCATTGATAACTTATAATGGGAAACACTAATTTTTTAAAGTATTTTAATTCTACTTTTTCCTTTCTTAAGTAAAAAAAAAAGGTTTAAGAAATAGTTTACAAATATAAGAAGATAGTTTTATTATTTCTAAATGAAAAATCTATATTTATAAGACATGAATGATATGACTTATAATAGCATTTTGTAGAAATGCATTCCATTTTTCTTTTCTTTTAG
Seq C2 exon
GAATTTTTGGAATGTGCTCATGAAGCCTGCAAAGTACATAATCTTCAGCCTGTTAAATTTTTTCTTGAAAAAATGATTCAGACATATGAGATGATGATCGTTAGACACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020802:ENSBTAT00000013592:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF077289=AAA_5=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]