GgaINT0021584 @ galGal3
Intron Retention
Description
NA
Coordinates
chr12:8925859-8926976:-
Coord C1 exon
chr12:8926857-8926976
Coord A exon
chr12:8925969-8926856
Coord C2 exon
chr12:8925859-8925968
Length
888 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
GTAATTTGGTCTGATTTTAGGAT
3' ss Score
7.45
Exon sequences
Seq C1 exon
CTTCTTAGATCAATTAAGGATGTGAATGAGCCCAAATTTTTGTCATGTGATATACCTCTCTTCATGGGTATAACTAGCGATTTATTTCCTGGAATCAAACTTCCTGATGCAGACTACAAA
Seq A exon
GTAAGTATAGTTGTAACCTTTCCTTCCTAAAAATTATTGGTTTTGCTTGTTTTGTAACCAGGTGATTAATACAATAATTTATGAATTACTGAAAAATAAGAAAAACTGCAGAATATTTGCAATGAAATTTGTACCACAGAAAATTCTTGAATCTGAGTATAATTCACATCCATGTTCCATTACGTACAGAATGACAGTGTAAGAAATCAAAACTGATCTGCAAATTTGCCGAATTTAAAAGTCTGACTGATTTCCTTCTTAATTTTTGGATACAATTGACCCCTAATTTTTGGATCTATTTTAGTGAAATTAAGCCTTGCACTTGTATTTTCTGTTGCTTATAGCAACGAATAAAGCACAGTTCCTTTGTAGGAGGATCACTGGGGAGAAGATGAACGTGTAGGAAAAGACAAAATGGACTAACTTTTTAAATTTTTCCAGAGAATACTAAACTTCTGACAAAACCATACTATGCTCAAGCACGCTGTTAGTTCCTGATGAGGATATAACATCCCCTCAAGATTAAATTGGTAGTTAACTCCTGTTGTAGCATTAGAAGTAGAAAAGTGTTGTGGTTTTTGTTTTGTTTTGTTTTTCCAGGGGTGACTGCTGTATTCTGGTTGATAGTGTTACATGTATTATTGAACGTGAAACCCTTATTAATGATCATAATCTCTTCTATCATAGTCCAAGATGATAATTTAAGGAATAGAGTGCAATGATTATTTACTTGTAGTTTTACAATGAATAAAATCTAATAAAAATACTTAGTCTAGATTTATACATCTATAAATTGTAAACATGAGAACTGGTTTTTAAAAGGGCAAAAAAGGAAAAGAAAAAAATGGTTGTAGCAAATGATAAGGTTGTAATTTGGTCTGATTTTAG
Seq C2 exon
GATTTTCTGGAATGTGCACATGAATGTTGTATTCAACATAACGTCCAACCTGTGAAAGCTTTTGTAGAGAAAATGATACAGACCTATGAAATGATGATTGTTAGACATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005601:ENSGALT00000008986:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF077289=AAA_5=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCAATTAAGGATGTGAATGAGCC
R:
TCATTTTCTCTACAAAAGCTTTCACA
Band lengths:
190-1078
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]