DreINT0058057 @ danRer10
Intron Retention
Gene
ENSDARG00000059987 | dnah12
Description
dynein, axonemal, heavy chain 12 [Source:ZFIN;Acc:ZDB-GENE-090311-9]
Coordinates
chr23:19611659-19611965:-
Coord C1 exon
chr23:19611846-19611965
Coord A exon
chr23:19611769-19611845
Coord C2 exon
chr23:19611659-19611768
Length
77 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
3' ss Seq
ATTTGTTTTTTATACATTAGTTG
3' ss Score
3.82
Exon sequences
Seq C1 exon
CTTCTCCGCTCCATCAAGGATGTCAATGAGCCCAAGTTTCTCTCTCATGATATCCCTCTTTTCAATGGAATTACCAGTGACCTTTTTCCAGGAATTTCTCTACCTGTGGCGGATTATAAG
Seq A exon
GTAGTGTGATATAATGTTATTAAATGTTTTAATGACATTAAGAGATTTCAGTTACGTATTTGTTTTTTATACATTAG
Seq C2 exon
TTGTTCTTGGAATGTGCTCATTTGTGCTGCGAAAACCACAATGTGCAACCTGTTAAAGTTTTCCTGGACAAAATTATCCAGACATACGAGATGATGATTGTTCGACATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059987:ENSDART00000134012:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF077289=AAA_5=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTCCGCTCCATCAAGGA
R:
TGCACATTGTGGTTTTCGCAG
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]