BtaINT0004563 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MKJ3]
Coordinates
chr22:44362990-44363696:+
Coord C1 exon
chr22:44362990-44363223
Coord A exon
chr22:44363224-44363507
Coord C2 exon
chr22:44363508-44363696
Length
284 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
TTGAATTTATTTTCTGGTAGAAA
3' ss Score
5.14
Exon sequences
Seq C1 exon
CTATTTATCAATGAATATGATACAATTCCATTTGAAGCGATCTCTTACCTGACTGGGGAGTGTAACTACGGAGGAAGAGTGACAGATGACTGGGACAGACGTCTCCTCTTAACCATGCTGGCTGACTTTTATAACCCACACATAATCGAAAACTCTCATTATAAGTTTTCTCCTAGCGGAAACTATTTTGCCCCTCCCAAAGGCACTTATAATGAATACATTGAATTCATTAAG
Seq A exon
GTAACTGATGTCACTGAAAATAGGGTTAGATTCAAGTGTGATTTTCTTAAAAGCAAATAGTGAAGTAGTCCCCCGTAATGTAAAAAATTAGACAAGTCTTAGGTACAATCAGCTTTCAATACAGTGTTTTTGTTTCTCGTAGTTACTGAGACTTGGGAAAAGTTTGATCCCTCTGTTGTTTGATGTTTAGTTGATTTTTAACCCTTTTCGGTCTGCACATGTCTACCTTATGAATTAACGTACCCAATTAAACTGTAATGCTTGTTGAATTTATTTTCTGGTAG
Seq C2 exon
AAACTTCCTTTTACTCAACACCCTGAGATATTTGGATTACATGAAAATGTTGATATCTCCAAAGATCTTCAACAAACGAAAGTCCTCTTTGAGTCATTGCTCCTCACCCAAGGAGGCTCCAAACAAACAGGATCCTCAGGAAGCACTGACCAGATTCTACTAGAAATTACCAAAGATATTCTCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020802:ENSBTAT00000013592:62
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.8=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(8.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGAGTGTAACTACGGAGG
R:
CCTTGGGTGAGGAGCAATGAC
Band lengths:
294-578
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]