GgaINT0021622 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NQR9]
Coordinates
chr12:8643382-8644230:-
Coord C1 exon
chr12:8643997-8644230
Coord A exon
chr12:8643571-8643996
Coord C2 exon
chr12:8643382-8643570
Length
426 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TTTGCTGTATTTTGCCCTAGAGT
3' ss Score
8.75
Exon sequences
Seq C1 exon
TTATTCATAAATGAATATCAGCATGTTCCATTTGAAGCAGTATCTTACCTGACTGGTGAGTGCAATTATGGAGGTCGAGTGACAGATGACTGGGACAGACGTTTACTGCTGACAGTGCTGGATGACTTTTATAATCCTGAAATAATTGAAAATCCTCATTACACTTTCTCTCCCAGTGGAAACTATTATGCTCCTCCAAAAGGCACGTACGAGGACTACATTGAATTTATTAAG
Seq A exon
GTAAAAGTTAGCAAAAAAAACCCCAAAACTGTCCTAACAATGACTGGCAAGAATGCAACCCGTAAAATCTTCTCTGCGTGAAGAAAGAAGTTTTGCAGCATGTTTTAATTGTGTGCTTGGTTTCTTGCATGACATACTCATATGATTCTTGCCATCAAGTATGTGTTTCTGACAGGGAGCAAGTAATCAGTAAGTAGATAGAATAGCCCAGCGAGTGTAATTGGGAAATGCTTGGGAATGGCTTTCTCTATGTGAGGTAATTGCTGTCACCAGTAACACTGTCTGCAAATAGCCATCATTAAAGTCCTAATTCACCTTCGGTTGAAGTCAGTAGTAGATTTTCACCCAGATTCTTAAATAAGCTTTGGATTTGATTCTCAGTCTGTTGCCTTATCTCATGCAGTTGTTTGCTGTATTTTGCCCTAG
Seq C2 exon
AGTCTTCCCTTTAGTCAGCACCCAGAGGTATTTGGTTTGCATGAAAATGTGGATATTTCAAAAGATCTTCAGCAAACTAAGATCCTCTTTGAATCTCTGCTTTTAACACAAGGAGGAGACATTCAGGGAACTTCTTCTGGAGGTGGTGACAGCACTCTTTATGAAATTGCAGATGACATTCTCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005601:ENSGALT00000008986:70
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.8=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(8.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGAGTGCAATTATGGAGGT
R:
AAAGAGTGCTGTCACCACCTC
Band lengths:
342-768
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]