DreINT0058099 @ danRer10
Intron Retention
Gene
ENSDARG00000059987 | dnah12
Description
dynein, axonemal, heavy chain 12 [Source:ZFIN;Acc:ZDB-GENE-090311-9]
Coordinates
chr23:19584231-19586659:-
Coord C1 exon
chr23:19586426-19586659
Coord A exon
chr23:19584420-19586425
Coord C2 exon
chr23:19584231-19584419
Length
2006 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCAA
5' ss Score
2.22
3' ss Seq
AAACTGTGTATGCTCCACAGAAA
3' ss Score
6.78
Exon sequences
Seq C1 exon
CTCTTTGTGAATGAGTACCAGGAAGTTCCCTTTGAGGCCATCACATATCTCACAGGAGAGTGTAACTATGGAGGACGTGTAACAGATGACTGGGACCGTCGCCTCCTCATGACGATCCTCGCTGACTTCTACAACAAAGACGTTATTGACCACCCACGCTACTCCTTCTCCCCTAGTGGCAAATATCACGCACCTCCAAAGTCCATCTACGAAGACTATGTAGAGTTTATCAAG
Seq A exon
GTGCAACTTTCATGTTATTCAATTACCAAGTACTCAAGTTTATTTGTATAGCACTTTTTATGATACATATCATTTCAAAGCAGCTTTACAGATTGCAAACATGATTTCACTTCACAATTAAAAGTAATCTTTTTGTCAGAGTTTACTTTGTCTAAGTAATGTCCATATTGCAGAACTGGAAACGCGGGGTCATGCGTCAAGTTTTGCAGTTTGCTGCTATGCAAAGTTCAAGCTTGGTGAACTCTGACCTGCGAAGTGGCATCACTTGACTGCGTGAGACCAATCAAGGATCAAAACATGACCTCTCTGGACAGAAATTTAAAACATGGAGCAATCGCTCGCTTTTTTAATGTCTAATCATCTTGTTTAATCCCACCCCTTTTCGCTGCGCCATACAACAGAATTCGCATTATCAAACTCTAGTGTGACCGCAGCTTGAATGTGAATGTTCTCCAGTGATCTATGAAGGTTAGATCGCTTGTGGTCGTGACACCATCACTGGTGTTTGGGGTCTGCTAATATTTTCTGCAGAGGCTGGGGCCAAACTTGAGCTGTCCTAAAGATGACTACAATCTTTGCTGAAACAATTATGCACAATACAATTCATTTTTATTCAAATTTAGGATTATTATTACTATTAATATTCAGTTTTAATCTAAAAAGAAGAAAATTGTTTAATGGAGAGATGCTTTAATATAATAGTTATAAATCATAAATAAATCATTTTTAATAGTTTTTTTATTTTGCCTTTGCCATGATGAGAGTACACATTTTTACAATATACAGAATACAGCTTAAAGTGCTGTTTAAGTTCTTAACTAGGTTAATTAGATTAACTTGGCAAATCTGGATAATTAGGTATGTTACTGGATTTGAGTGCTTTGTACTGTAGCCAATCAAAAAATAAATCTTTATATAAATAATATTCTAAACATACTATCTTTAAAAAACAGCTTTTCCAGCCAAATTTAAATACATAAAAATACATAAAATGTATTTTTTTGTTCAAATATCTAAAAATTCTTATATCAAGAAGCATTGTCTTGTTTTTGAAAATAATATCCCAATATTAGGTTAGTTTTTCCTTAAAACAAGCAAAATAATCTGCCAATGGGGTAAGCAAAATAATCTTGTTTTCCCTTTTGACATAAGTTTATTTTGCTTAATCCATTAACAGATTATTTTGCTTGTTTTTAGGAATACTTGCTTAATTTTGGCATATTATTTCTGAAAACAAAACAATATGTTCTGCTTGTCTAGAAAATTATTCTTGATTTAGGAATGTTTTGAAAAAAGACAAAAAATCTGAGTAAGAAAATCATTTTAGTGTTACCAGATATAGCTGACTTTTTCCAGCCAAAAGGCTGTCCAAAACTTGCCAAAACACGCAAAAAAATCCCAAAATATTAGATTAATATTTTATTTAATTTTCATTTATTTAAATCAAAATTAACCCAGTTAATTTAACTATCATACAGCAAATAACAACAGAACAGAACCACAACATAACCAAATCTCATCGAAACACTGCCCCCCTCTCACCCACACACTGCTTAATGTTAGAGTATGTTTTACTTTCGAAATGGGGTATACATTTGTCTTACTTGGCATCTTAAAATCTTTTAAACATAACTAGATGCTGCCTAATCAATCAGGCAACACTTCTATGTTTGTTTTTGGTGTCAATTGTGAAAAAAAAACTATGGAGATTAGTGTCATGATGAACTGCTGTTCAGTTACGTTTTGTTTAATAAGTTGCATATAAAAGTCATTTTAAAACCACCCAAATTTTTTCAACCCGCCTATGCCATTTTTTACCTGCACAATTTAACCGCCCAACTGGGTGGGAAACCGCCCAATCTGGCAACACTAAAGACTTTCTCCAGAAGAAAAAATATATAGTAGGAAATACTGTGAAAATGTCCTAGTTCCTTTAAAAACTTGGGAAATATTTGAAAAATAATTCAAATTTCACAGGAGGGCTTAAAACTGTGTATGCTCCACAG
Seq C2 exon
AAACTCCCATTTACCCAGCATCCCGAGGTGTTTGGCATGCATGAGAACGTGGACATCTCCAAAGACCTTCAACAGACAAAACTCCTGTTCGATTCCCTCCTTCTGACGCAAGGTGGAGGCTCAAAGGGCGGAGGAGGCTCTGGCGGAGACAGCACCCTTCTGGACATTGCTAATGACATCCTTTCTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059987:ENSDART00000134012:62
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.063
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(11.3=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(9.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]