GgaINT0021622 @ galGal3
Intron Retention
Description
NA
Coordinates
chr12:8890760-8891608:-
Coord C1 exon
chr12:8891375-8891608
Coord A exon
chr12:8890949-8891374
Coord C2 exon
chr12:8890760-8890948
Length
426 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TTTGCTGTATTTTGCCCTAGAGT
3' ss Score
8.75
Exon sequences
Seq C1 exon
TTATTCATAAATGAATATCAGCATGTTCCATTTGAAGCAGTATCTTACCTGACTGGTGAGTGCAATTATGGAGGTCGAGTGACAGATGACTGGGACAGACGTTTACTGCTGACAGTGCTGGATGACTTTTATAATCCTGAAATAATTGAAAATCCTCATTACACTTTCTCTCCCAGTGGAAACTATTATGCTCCTCCAAAAGGCACGTACGAGGACTACATTGAATTTATTAAG
Seq A exon
GTAAAAGTTAGCAAAAAAAACCCCAAAACTGTCCTAACAATGACTGGCAAGAATGCAACCCGTAAAATCTTCTCTGCGTGAAGAAAGAAGTTTTGCAGCATGTTTTAATTGTGTGCTTGGTTTCTTGCATGACATACTCATATGATTCTTGCCATCAAGTATGTGTTTCTGACAGGGAGCAAGTAATCAGTAAGTAGATAGAATAGCCCAGCGAGTGTAATTGGGAAATGCTTGGGAATGGCTTTCTCTATGTGAGGTAATTGCTGTCACCAGTAACACTGTCTGCAAATAGCCATCATTAAAGTCCTAATTCACCTTCGGTTGAAGTCAGTAGTAGATTTTCACCCAGATTCTTAAATAAGCTTTGGATTTGATTCTCAGTCTGTTGCCTTATCTCATGCAGTTGTTTGCTGTATTTTGCCCTAG
Seq C2 exon
AGTCTTCCCTTTAGTCAGCACCCAGAGGTATTTGGTTTGCATGAAAATGTGGATATTTCAAAAGATCTTCAGCAAACTAAGATCCTCTTTGAATCTCTGCTTTTAACACAAGGAGGAGACATTCAGGGAACTTCTTCTGGAGGTGGTGACAGCACTCTTTATGAAATTGCAGATGACATTCTCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005601:ENSGALT00000008986:67
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.8=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(8.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGAGTGCAATTATGGAGGT
R:
AAAGAGTGCTGTCACCACCTC
Band lengths:
342-768
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]