BtaINT0005175 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N6K9]
Coordinates
chr22:120128-124538:-
Coord C1 exon
chr22:124365-124538
Coord A exon
chr22:120235-124364
Coord C2 exon
chr22:120128-120234
Length
4130 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAT
5' ss Score
7.84
3' ss Seq
TGGTTTTCCCTGTTTTACAGGAT
3' ss Score
10.46
Exon sequences
Seq C1 exon
GCCATAGAATGCCAAGAAGAGGAGTGTGCAACTCTTCTGCTCGAGCATGGTGCCGACCCAAATGTCATGGATGTCAGTGGAAACACCGCTCTCCACTACGCTATCTTTTGCCAGAATATACCACTCACAGCAAAGCTGCTTTCCTGCAAGGCCAATATAGAAGCCAGGAACAAG
Seq A exon
GTATATCTCAATTAACTTTATTTACAAAATATTTGTGAAGCATTTTTTTAGTCTACAACTGTTTTATTTATAACAGTATGTAAATAGGTAAACTGAATAGTGTCCATCAAGCCCTGTTACTATGGAAACAACTCCAAGACCAAGGCAGGGGTGGGGGATGTGTGTCTGTGTCCACAGAAAGGACAAAGCTCTGTCTCCCAGCCACCCGTCTACCCCTGAAGGAAGATTTCCTGTCAGAATGTGCCCGGGAGTGGGTGGTAGGCTCAGAGCCCACAAATGATGAAGGCCTCGGGGGAGTGAAGCGATGTGAGGAGTGGCTGCTTCCAGGGGCTTAGGGAATGGGTGTCCCTGAGGGTGGGTGGGAGGAGGAAGGAGACCCAGTGCCCCTGAGGGGGAGCCAGGTGAGTGCAAGTGGGTCTGGGAGGCAGCAAGCCTGGAGCCCTGAGCCCTCCAGGACCCCAGTTCTGAGACCTGGCCAAGAGGCTCAGGTCATGTTTGACTCCCAGCAAGGGTGTTCACTTGTGCAGGTGACCGCTTGGTTCACGATGTACACCTCAGGGTCTTCTGCTCTCAGCCCCGGGGAGCTGCTCAGTGGGGTTGCAGCTGTGCATGTGGAGCTGGTGATGGTGAAGCCGCCCCTCCTGCTCTTTCTCCAGGACACACGTGACGTCCTGCAGCTGCAGCCCCTCCAGGAACTCCCTCCAGTCTCACAGGTGAGCTCAGTTTTCCGTGTTTGGAAGCTGCAGCCTTCCCTGAGTGAAAGTATTTTGAAAGAACCAAATTGTCTAAGATTTCACTTTATACATATTTCTAAAGATGTATTAGAGAGTAAAGCATTCATTCATGTGTTTATGACAGATATTTGTGGTAACACTGCACTTGTTAAGGGTAAAACTTTCTGAATACTTTGCCCCCCACTGAAATTTTTTTTGATTGGCATAAAAACACAGTAAAGCAAAATTTGCCTTAGAAATAGACTTAGTCTTAAAACTCAAACATAGCATAAACATTTTACAACATAATAGACATCTTGCTGTTGTTAACAAATTCCTATTTTATAAAAAAAATGATATATATAAAAACGATTCCTCTCTTATTTCCCAAGGCTTAAGAAAGTAAAGGAAAAGGGAAAAGGAGAGAGCAGGTGAAAAATGTAGGTCAAGTTGGAATTTCGGCCATTGGGAAATGCCAAAAAGAGGTTTTTTTTTTTTTTTTTTTTAATATTTATTTATTTGGCTGTGCTGAGTCTTAGTTTCACCATGATGCAGGATCTGGTTTCCTGACCAGGGACTGAACCCAGGCCCCTAGACTGGCAGCCTGGAGACCCAACCACCGGACCACCACAGAAATCCTGAGATTTTTGTTTTTGTCTTTTTTTTTTTTCCCCTTCAGTTTATATAATTTGGTAAGGTGCTTTTCAGTTTTCAGGGATAATACTTGTTATTTTGAGAAACAGGGTGAGTGGATGGTATAGTAACCTATGTATCAATTTTAGGAAGAATTTGAGGAAATCAGACTGGCAGTGAACAGGTGGTGATTAAGTGGGAAATAAGAGAGAAGAACAAATAATTAACTGCAATCTTATCCTATTCTGGCAGAAACACCCACTTAGATAAGAGTCTAGACTCTGCTCTCCAGTCTAGAATGTCTTGATGAAAAGTAAATGGTTTATAAATAATGAGATCAGGTTGCCTTTTGAGTTTACTAGTCCCTGTTCTGGAGAAGGCAATGGCACCCTACTCCAGTACTCTTGCCTGGAGAATCCCAGGGATGGAGGAGCCTGGTGGGCTGCCATCTATGGGGTCACACAGAGTCGGACACGACTGAAGCGACTTAGCAGCAGCAGCAGCAGCAGCAGTCCCTGTTCTACCAGTGTTTACCCAGGAAATTTTCATGCTGTTTTGATGACTTCTACCTCTTACACTTTTCTTTTTTATTCAAATCTTCAAGTAAGAGAAGGAATTGGCCATGTGGGTAAGAGATGAGTCTGGAGTGGTTGCTGTGCTAATTCTTGGTTAGATTGTGCTGGTGAAAACCACAATCACCTGGGAAAACTTAAAAATATACATAAAAAAAAACATAAAAAAAATTTACAAGCCTAGGTTGTTCCCTGAAGATTTTGGTGGAATAAATCAAGGAAGGCCTGGATGTGTATATTTAGAACTGTTTCCTTGAAATTCTGATATGCTCTGTGGTGAAGAACTATGGACTGAATAAGTGTGATTTCTAAATGCACCTATTTCAAAAATAAGTAATCTCTAGAAGAGTTGGAGTTTGATCAATGCTAGCTACTTCCATCAGCTCCTTCCTTTGCAACAGTATTAACCTGACTTTTTCTCTGCCTGTGTGATTAAGAAGTTAAAAGGAATATTATTGGCAATATCTACTGGCTTGAATGATAACTCCTTTTCCTTTCAACCACTAATTATTCAGTTGTACTCGGTCTTCAGAGATTTGCTTATGGTGAAGTCAGTTCATCTGTAGAGTCTGACCTTTTTAGGATTTTGCACCTTCTGTTTTCATCCAGGTCATTAGGTCAACAGATGTTTGTTACCAACAGGGTTTTCCTGACTGCAGTAATAGTAATTCATGAGCCTTCTTTTGGTGTCAGCTGCAGGACAGACTCTTGCAGTGTGTCTGTTAGATTTGCTGAGCCCTGGCATAAGCAAAATGAAAGCTTTAAACATCAAAACCCATAAAGTTAGTAATAGTATAGATGGGAATTTTTTTGATGATTTAATTTCAGCAGTCTTAGGTACTGAATATCCATTTGATTAACAATCTAGAGGAATTCTAGAGATAGATTGTAGTTTCAACAGGTAGTGGAAACATTCTTGAAGTGGAATTATGATTTTTTAAAAAATTATGTTTAATTAAATTATGAGCCTTAATAGCAATTTTTATTATGTGTTGGGCCTACTTTTTGTGAAACACACGATATGAAGAAGGGACGGTTTCACATACAAATACTTGCTTTATTCCCACCTGTTTGGGAACAGCAAATGTCAAACCACAAGTGGGCCATTGACCAAGCATGGCCCTTAGATATGTTTATTTACCTCTGCAAATTGAGTCAACATTTAAAATTTAGGAGACTCATGCAGAGGTCTGCATTTCAGGCTTCTCAAAGAACCAAATCTGGTCCCTCTTGAGCCCATTCTACTGTTTGGTCAGCATTCAGAGGCCGCCCCTTCTGTATGGAGCATGTGTTCTCGGGTTTGCTGGCCTTACCTGGCCTTTTCACTTATTCAGGTCACCAACTTTCCTTCCATATGCATTTGAGTTTCCAATTCTTGTTTTATAGTTTATTTTGATAATTATTTCAATATTTTAGAGACTCTAATTAATCTGTAATTGATTTCATATTTTAAAAGGATTTCTTAAGAATGAGATTGAATTTTTCAAAGTAGAAATTATTAGTTGGTGTTTTCGGGAAAAAAAACAAACAAACTATTTTCCTTTGCATGTTCATATAGAGAATAATATTCCCATTGGAATGTCTGTAAACCTTGTGAGGTTACTCATTATCATCCTTGGATCGGTTATACATGCTACAGATAATAATATATATTTCTGCCTCAGCATTGTTCCTAAAATATGCTGTTGATTGAGTAGTTAATTGATTCTCTCTGGAGGAGTGTTGAGTGTAGTAATAGAGCAAGTGAATACTACGATATCCCTGATAAATAGTATGATAGGAGCAAATATCCTTGGAGCCAGTAAATGTTGGAAGTGAGTTTTAGAGAATGACTCTGTGATTTGTCTTTTAAAGAAGTAGAGGAGGAGCATTTTATTTATCATTTTTAAAAAAGACATATTTGACTGCACCGAGTCTTAATTGTGGCACATGGGACCTTTAGTTGCGGCATGTGGGATCTAGTTCCCTGACCAAGGATGGAACCTGGACGCTCTGCATTAGGAGTCTTAGCCACTGGACCACCAGGGAAGGCCCAGAGAAGGAGCATCTTCAAGAGAAAGAAGGCATGCAGGGGCATAAGGAAGAGGGGGCTCCCTTTTATTTGCTTTCTGAATTCTGTGTTTAAGTTCAGAGAATCTATTGCATGACTTCAAAGTTCAGCTTTGAAATAGGTTAACTGTGTACGTTAGAAATGGTTTTCCCTGTTTTACAG
Seq C2 exon
GATGACCTCACACCGTTGTCGCTTGCTGTAAGTGAAAGGCAACAGCAAATGGTGGAGTTTTTCGCAAAGAAAGAAGCAAATATACATGCAGTTGATAAGATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023954:ENSBTAT00000029934:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(24.5=39.7),PF0002325=Ank=WD(100=56.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]