BtaINT0005807 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BPG1]
Coordinates
chr6:14193472-14198254:+
Coord C1 exon
chr6:14193472-14193657
Coord A exon
chr6:14193658-14198069
Coord C2 exon
chr6:14198070-14198254
Length
4412 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TGTCTCTTCTTTCTGGATAGGTG
3' ss Score
11.35
Exon sequences
Seq C1 exon
CCTGTTGAGTTTCAAGGGCACCAAGTGAAAGGCTCCGCATCTAGCGCTGTGATGGTCAGAGGACACAGCTCACAGGTTGAATGCAGTCAGCTTTCGGATAGCACTGTGTATGGAAGCTGCACGACAAACACTTGTTTTTTGACACCAGAGTTGCCTAGCACTCGTATGCAGATGGGCTTCTTGCAG
Seq A exon
GTAAAATGATTCTTATAGTCGCACCTTGCCAAATCATTTTCTTTATGTCAATACTAAATTTTGCAAAGAAAGCATATTTACATCCTTGTACAGCTGTAAGTTAAAAAACAGTTTAGTAAATTCACATGAAGCATCATAAATCAAACTAAGACAAAACTGTTTGAAAGATTTACTGCCTTTTTTGGGATCAGGAACTTAAAGGATTACTTTTCACTTCAGAGAATATTAGAAATTCATGACAAGAGCAAATAGGCGGATTATAATAGAAAATATATTTTATAACAGCTACTAGATTTGTTTTCCTTCTAATATCCACCCCTCTCCGCCACTAAGTAGATGCCAAGAACCTCTCATTGCTTCCAAATAGAAGAGGTTATTGAGAAAAGGATGTATGCATGTATTTGAAACAGTATCTGTTAAAGAGATTTAAAATTTTTCCATTTTTTATTAAAGCATAAAACACATACAAAATAAATGCACAGACCATAAGTATACAGCTCAGTAATTACCACAGGGTGAAGACAGCCATGTAACCTCCACCCTTAAGAAACAGAGCATTACCATGGTTATTGGGGTTTATCAGTTTGTTTATTTCTTATTGGGATCTCTTGTAGTAGGTACTTTGGTTTGACTTTCTTCCATATTGCTAAGCCTATACTGTTTCCCCATCCTTTTAATATATTGTAATTCAGGGATACCATTATTTCTTAGTTTCATGAAAGGTAAGAGGTGTTTCTATTTCTCATTTCTTGGTTTTTTTTTTTAAAGAGGAGAATTGAGAAGTACTCCATACTGAAAAAGAAATTTAGGTCCATTTGTTTTATTTTTAAATATTTTCACATACATCAGTATGGTCATGTTTTATATCCCAAGTTTATAAAAAATGTTCTAAGGCAAAATGACTGGACTTACCAACAGAGATAAGAACTTTGAGAAGTGTGATAGATTGCTTGCACACAGCAGTATCTGAACTTTAGAAATTATCTTGTATTTCATAAAATCCCAAGATATTATAATTAACTGTAAGAAGCACCATTGTAATATATGATACTAAGAAATTAACACTAGTCAATTAACATTACACAGTGCTTTTTCACTGCCTTTTTAAAAAATGTGGTAAAAAACACATACTATAAAATTTACAATCTTCACCATTTTATGTGCACACTTTGGTAATGGGAAGTACATTAACAGTGCCGTGAAATAGATCTTCAGAACTTTGTTCACCTTCACTTGGATTTTTAATGTTATATTTAGTGAAAGACTCTTAGATTTATTTGAACATAGAGTTTTATTGTATATCACACTGCTTTGTTTTCTTGTCTTTCCATGAATATAATACTTTTTGTTTGATGCTAAACCCTAGTTTGATCTTCTTGAGGACATATAAACAATAGAACTACTTTAATATGTCTAATATTAATAATGCACAAATTCATATTTGTGATCATTATTTGACCAGTATGACTGTTTGCATATAGTTGCACTGCACAGGCAGAGATAACTATGTCACAGCTGTTGTCTGTGCTATAGAGATGTAGAAATGTCATTGTTTTTAAGGTGTATCCCCATCTCAAAGATGTTAAGAGATAAGAAATATGAGCCATAAGAATTGATGAAATATAATATATTCTACTTTCCCTGAATGGAATTGGCTTCATAACATCTCTTTGTTTTTCTGTGTCTCAAGTTATAAACTATATAGGTAAAGTTATGGATGTATACACACTTTTTTCTAAACTGATAAATGGATCTCTATTTTCTAGTTCCCAAACGAAGAAAACTTTACAAAAGGAGATACTAGCTTTACTATTGAAGACAATTTACAAGTGAGAGCTGAGTTTAATAAGGACTTGACTAAAAATGATTGTAAGTATATTATAAATAAAATATAATATTAAAAAGTTATTTGACGTTGAACAAACCAGTGTATAAATATTCATGCTTTTTCCCCCCCGACAGCAATTTTAGATTTCCCTCCTAAAGATTCAGACCATTTATATAATTATTTGGATTATAATTTTAAATCAACAGAGAGGACTTCGTGGGAAAAAAATAAGGTATAATGTGAACAAAGTTGTTTTTCTTTTTGCTTTGTTTTTGTGGCCACACCCTGCAGCTTGTGGGATTTTGGTTCCATAATTAGACATGAACCTGGCCCTGATAGTAAAGCGTTGAGTCCTAACCACTGGACTGCCAGGGAATCCCCTAAACAGTTTTAATAGTTGTGAGTAAAAAAAATTTGGTGAATCTTAGAAACAGCAAGTGAGATTGAAGAGCTGGGTGGGTTCAAGAATGTGAACGAAGGCCATAGTAGCTGGATTGTGGAAAGTCACAGGCAAAGCAGTAATCAAATGAAACTGGGAAAGTGAGCAGGACCAGATGCACAAAATCTTGCAGGTCAGATTAAGAGGTTTAATATTGGTCTACGTTCCATTGTGAAATTACTGAAGGGTTTCGGCAGAAAACTCATTACATTTACATTTTTAAAAGGTTTTGCTGGCTGCTGTGTGGAAGATGGATTTGATGGACACTGTGGTGGAAGCAAGGAAACCAGTTAAAATGAGCTGTAGATGACAGTGACTTGAAGAGACTGGCAGTGAAAGTATAGAGGAGTTGGTAATTAGATTTAAGATAAATTTTGGAGGCAGAAGCATGGATGTTGCTAGGTTGGATGTAGAGAGCAGAGTGAAGGAAGGGGAGGAGAAAGCCTCCTGGATTTCTGACTTAACAAAGTGGGCTGAAGTGGGCTTTACTGAGTGGAGTCAGCTGCAGATCTCTGTTAGTCTGCTAGGGCTGCTCTAATGGAGGATGAGTGACTTAAACAACAGAAATTTATTTTGTCACAGTTCTGGAGGGTAGAAGTCCAAGATCATGTTTCTGATGAGAACTCTCTTCCTGGCATACGAACGGCTACCTTCTCACTATGTCCTCATGTATACTTCCTTGGTATGTGCACATGGATAAAGAGAGTGCAAGAGAGTGAGAATTCTCTTCTTATAAGGACACTAATTCTGGTGGCTCAGGGTACCACTCTTACGGCCTCATTTAGCCTTTGTTACCTCTTAAAGGCCCCGTCTCCAAACACAGTCACACTGGGAGACGGGGAAGAAAACAATAATAAAAGGTGTTGCGTCGTACTGGGGACCCACTACGTGGCCTGTAAAACAAAACTCAGGATTGTCCTCCCTGAAGAATAAGAAAAGAAAGGTATTCACATACCAGTTCCCATCTGTCTTTGGCTGAAGGTTACTCCTGGTCATATTAACCACCTGGCACGTTTGGCCTGCTGTACCTGCTGTCCCAGCCACTGTCCTCAGACAGAAAGATGCAGATGCTTGAGATAGGAAGCCTAGGACAGGTAGGGGAGCAATTCTCCAATTGTAGATGACCTCAGAGATAGGCCAGGGAGACATGGCAGGATAGCAACAGCGTCTGCTACAGTGGTTAATGGTGGGAATCTTAGGAACTTTTCAGTGGGCTATGCTTCCTGCCATGCAGAGGAGTCTGGTCTACTGGGAGAGCACAGAAGCGGACTTTCAGAGAAAGAGACAGAGTTAGTGGCAGCAGAAGCCCTGATTCCAGCTGGTTTTGAGGCCCTGGCCCAGCTCTGTTCAATTCATACTAGATTTTTTTTTCATTGGAGGATAATTGCTTTACAATGTTGTGTCGGTTTCTGCCACATATCAAGATGAATCAGCCATAGGTATAGATATGTCCTCTCTCTCTTGAACCTCCCTGTCACCTCCCACTCCATCCCTCCCCTCTAGGTTATCACAGAGCACTGCAACCCATATTAGATTTTTAAGGTGATTAATTTCTAGAAGTAGCAACACAATTAAATCCCATTAGAAGGAGAATAACATAGAGAATGATATGACTGTTCAGATATGGAATATATTAAAGAAGAGTTTATTCCATTTAGAAGCAATATTTTGAAGTTTTAGATCAACTGTAGATATACCCTAGACCTAAGGACATAAAGAAAAAGCTGTTCAGGCCTTGGGTTTGCAGGAAGTGTTGTCTTCCCAGCTCCAGACATGAGATCTGCTTAAGCCTGTGTCCCTAAGACTGGAACCTGATCTTCACAACCAAATCCTCATAACTCATATCAATCCAAATCAGAATCTGACCCATTTCAAATAAATCCAACAGGTTTATGTTCTGTATTTCACTTTCCAATATCCTTGTTTATTTTAGTGCATTTATTCTGTCCTGCCCCTTTTGGAAGGAACTTTGCCCCCCTATAGCTCTACACAATGTGCTTGAAAGCATTGGTTTTTTTTTTAATTTTTTTATTTTTTTTGAAAGCATTGTTTTTATAATACAGTTACTAGAATTTGTTCAGACTATAGGGGAAAAATGCAATAAGAGGATTTTGGTCTGTAGTTTTGTCTCTTCTTTCTGGATAG
Seq C2 exon
GTGACGTCACCAGAACAGAAGATCTCAACATTAAGCCCTGTTTCTACTTTATCTTTTAACTCGAGAGATGATGACTTCATGCTAGAATTCTCTGAGGAGTCCCTGAAAGGGCAAACTTTACCTGGTAATGTTTACTTTCTCAGCGTAGATAATTGCTCCCGTATGGTTCTAATCTATCTGTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026936:ENSBTAT00000049376:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.258 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]