BtaINT0005930 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BPJ3]
Coordinates
chr5:346854-350386:-
Coord C1 exon
chr5:350249-350386
Coord A exon
chr5:346922-350248
Coord C2 exon
chr5:346854-346921
Length
3327 bp
Sequences
Splice sites
5' ss Seq
TATGTAAGT
5' ss Score
6.69
3' ss Seq
ATCGCATTTTTAATACATAGCTT
3' ss Score
4.13
Exon sequences
Seq C1 exon
AACAGCCCTCATGCTTGCTATCAAGTATGAATCAGCAAATGTCATCAGACTTCTTCTTCAACAAGGTGCTGACATCTTTTCTCAAGATGTTTTTGGATGGCCTGTGGAAGAATATGCTGTTATTAGTGGTTTTAATAT
Seq A exon
GTAAGTGTTCACATTAAAATGCCAGTTCTCACTAAACTGCAGCCAAAAATAATTTTAACTGTTACTTGCTACGTCACCAGTGAGAGTTCTAATTTGGTGCAGGCTGTTTGGAGAATGGTGGTGAGATGTTCACCCTCAAGAGCTAAAAGCCAAACAAAGGCCGATTAGTTACTCTTGGCTGTGGGCTTGGGGTGCTTTATCTCAGGACATGTAGACCTTGATCCTTAGAAAGCTTGACATTAGCCATTTCATTACAAGTGTGAACAGTGTCACAGTTGTGATATTTCTAACTAGTTCTTTGGGTCTTGAAATATTTAGTTCAGCAGCAAATCCTGTTTTCCCTTGAGGGCTTGCCTCTCTATACGCTCCCATTTGAATTTTCCAAGAACCCGGAGGATTCCTACAGGTCATTTGGAGGGGAGAAAATAGTTCCTTCTCATCATTCTGTTCCTTGCATTGATTCTACTGCTGCAGCACTGCTGCTACAGCTGGTCTTGACAGGATCTGCTTGGCAGCTGGATCTGGAGTCTGGATAGGGCTCTATAAAGACCTTTAATAAAATCATTTTAAAAGGAAAAAACAACAACAACAACAACTCATCCTGCAGTGGGCTCACGATTTACCTTTGCTCCCAGGCCGCCCCTCTGGGTCCAGGTTCCCAGGGTGATGCACATGTCGACTTCAGAGTGAGAGCTCCTTTGTTCTCATATGTATGCTTGTCGCTCAGTCACTGTTGCAAACAAAACTCCAGCACCCAGTTCAGGCAGCTGGGCCGCCTAGCTTCCCCCCTCACTCAGAGACCTTATGTGGAGCCCATGTGGAAGCCTAGATCTTCACGATGAGGTGCCCTTGAGGCTCTTATTTATCTTTTCTGCTAGCAGATGTCAGTGGGGACCATTTTAGGCTGTCAGAGAGGGTCAAGTGCTCTTGCAGGAATTGAGCAGACTTCCCTTTCTCCTTTGTATCTAGACTTGAACCTCAAGGCGGCTTTCTGTCCTGTGGGGGCACCTTTACTTAGGTCACAGGTTCCCTGTCATCCTTCCCAGAGTACTGGATGCCAGCTTGCCTGAGATTCCCTAATTATGCTTGGCCCCTCATGGGATCTTTCCTGTAATAATGAAAATCTTCCAACAGATTTCTGTCTGCTTCCACCTTAAATGTTTCAGAATCTGCCCCATAGGAACCCATTCAGCAGAAATCCCTAAATCTCAAGTAAGATAGTTGGAATTCAGAGAGGTAAGCCCTGTCTAGAACTTGCCAGTACCCACTGTAAGAGTAGAGATATGTCTTCCAAGTGAATTGGAGAGGAACATGGAGATTAAAGAGATACTAAACATGGAGATTAAGCAGATCTTTCATTGTTAGAAAGATCTGCTGGTTCAGAGTTTGAGTAGGTAGAGAAGGAAGAATAGTGGTCCAGGCCAGGTCTTGATTGTGATTAGTTTTCTGCTCTTGATGTAATTAGCTGCAATAATGGGGGATCATTATGTTCTCTAATGTAGTGAATTCATGTTATAAATAAATTCAGGTACACGTTATCTAAAAGCTGAGATTCCCTAATTTACAAACCACAAAGAACAGCTAATCACCAGAATTAATAACAGTTTCATGCAACACTTTAATGTTAAACGTATGAAAAAGCACACATTGGGATTTACTTTGAATTCCAAAGTAGTTACAGCAATAAAGTTGAAGATGAAATTATTCTACTCTTTGACTGTTTCTGCAAGCATTTTGTGCGTATATTATCTCATTACATCCTATTAATCCTCTTGTGAAATAAGGTAGTAATATCCCAGTTGTGTAGAGGAAGACTTTGAACTGAAGACAAACAACTCCTCCAGGAACAAAGAGCAGTTGGTTATAGAGGTAGGATTTGCAAGCTCAAGAAATTTTTCATATGCCAAGCTGCTGCTGCTGCTGCTAAGTCACTTCAGTCGTGTCCGACTCTATGCGACCCCATAGAGGGCAGCCCACTAGGCTCCCCCGTCCCTGGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTCGTGTCTGACTCTTAGTGACCCCATGGACTGCAGCCTACCAGGCTCCTCTGTCTATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATTGCCTTCTCTGATGCCAAGCTAAATCTAGTTAATTATTGGAGCTGTACTGCCCTGAGTTCATTACTAGTTCATCTTCCTTTTCTTTCTCCTTTCAGTTCAGTTGCTCAGTCGTGTTCGACTCTTTGGGACCCCATGAACCACAGCACGCCAGGCCTCCCTGTCTATCACCAACTCCCAGAATTTACCCAAAAGCATGTCCATTGAGTCGGTGATGCCATCCAACCATCTCATCCTCTGTTGTTCCCTTATCCTCCTGCCTTCAATCTTTCCCAGCATCAGGGTCTTTTCAAATAAGTCTGCTCTTTGCATCAGGTGGCCAAAATATTGGAGTTTCAGCTTCAACATCCATCCTTCCAATGAACACCCAGGACTGATTTCCTTTAGGATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTTTCCAAGACCGCAGTTCAGAAGCATCCATTCTTCTGCACTCAGCTTTCTTTATAGTACAACTCTCACATCCATACAGATGTGAGACTATCGGAAAAACCATAACCTTGACTAGACGGACCTATGTTGAGAAAGTAATGTCTCTGCTTTTTAATATGCTAAGTTGGTCTAACTTTCTTTCCAAGGAGTAAGCGTCTTTTAATTTCTTGGCTGCAGTCACCATCTGCATTGATTTTGGAGCCCCAAAAAACAAAGTCAGTCACTGTTTCCCCATCTATTTGCCATGAAGTGATGGGACTGGATGCCATGATCTTAGTTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTCACTCTTCTTTCACTTTCATCAAGAGGCTTTTTAGTTCTTCTTCACTTTCTGCCATAAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTCTCCCATCAATCTTGATTCCAGCTTGTGCTTCATCCAGCCCAGTGTTTCTCATAATGTACTCTGCATATAAGTTAAATAAGCAGGGTGAAAATATACCTTTACTTTTTCCTGTACTACATGCTACATAAAAGTTTATATAACTTAGAAATTTGATATGTATGTGACAATTGAAGTTTTGATATTATTTCTGACATTGTCTGAAATAATCTAAGAATTTGGTAGTTGTTTTTCATATCAATGTTAAAATATTATGTATCGCATTTTTAATACATAG
Seq C2 exon
CTTTTGCCAACTGATTTCTGAATATAAAGAAAAAAGATCTAAATCTTCTGCTGAAAATAGCAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027770:ENSBTAT00000014687:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.500
Domain overlap (PFAM):
C1:
PF0002325=Ank=PD(93.8=63.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]