BtaINT0006107 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MV65]
Coordinates
chr18:58703860-58706749:+
Coord C1 exon
chr18:58703860-58703948
Coord A exon
chr18:58703949-58706622
Coord C2 exon
chr18:58706623-58706749
Length
2674 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
3' ss Seq
GATATGTGTTTTCATTTCAGCAG
3' ss Score
7.02
Exon sequences
Seq C1 exon
GATAGACCTCTGAAGACTCATGTTGCCTGAGGAAGCCCAGAAGAGGAGGAAGGTGAAAGGAGGAAGAGTCTGGAATGGCTCTTTCTCAG
Seq A exon
GTGAATTCATATTCTTGGTTGATTATTCTGTTTCTCCTTTCTTTTCTTTTTTAATTAATTTTTTTTTTGAATACAGCTACTTTGCAATGTTATGTTAGTCTCTGCTGTTCTCCTTCCTTTGCACTTGCTAATCTCTGACTCAAGAAGTAGCCTGCTTGATTCCTGTTCATTCACACTCACCTAGGGCCTTCTCTTAGTCACTGACACGTACCCTTAGATTCCATCTGTGACTCAGTTTTCTACTCTGTAAAATGGAAACAGATCTTTCTCTGATGAGTTATTACATTGACAACAAGTTAATTCATGAAAAGCATCTAGAGTAATGCTTCCGTGGTAGCTCAGATGGTAAAGAATCTGCCTGCAATACTGCAGACCTGTGTTTGATCCTTGGGTTGGGAAGATCCCCTGGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTGGCGGGCTACAGTCCAAGGGATCACAAAAGAGTCAGAAACGACTGCTACTACTCCCACTAGTATTACTAGAGTAATTCATAACATACAGGAAGTGTTCAAAACTTGTAGTCATTGCTGTTAATCATCATCACAGTTTTTAGATTCTGAGCTTTCCTTAACACCTTTGTATAGATGACCCAGTGTTGAATTTCTGTTTGTGTATTTCACGTGTCATACAGAAAAATGAGAAATCCACATTGATTTGGAGGCCATTGTAATCTCCTATGGGAAAGCAATTAGAGAGGCATCAGATCAGATCAGTCGCTCAGTCATGTCCGACTCTTTGCGACCCCATGAATCGCAGCACGCCAGGCCTTTGTGTCCATCACCAACTCCCGGAGTTCACTGAGACTCACGTCCATCGAGTCAGTGATGCCATCCAGCCATCTCATCCTCTGTCATCCCCTTCTCCTCTTGCCCCCAATCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTCGCATCAGGTGGCCAAAGTACTGGAGTTTCAGCTTTAGCATCATTCCTTCCAAAGAAATTCCAGGGCTAATCTCCTTCAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACTCTGCAAAAGCATCAATTCTTCGGCACTCAGCCTTCTTCACAGTCCAACTCTCACATCCATACATGACCACAGGAAAAACCATAGCCTTGACTAGATGAACCTTCGTTGGCAAAGTAATGTCTCTGCTTTTGAATATGCTATCTAGGTTGGTCATAACTTTCCTTCCAAGAAGTAAGCGTCTTTTAATTTCATGGCTGCAGTCACCATCTGTAGTGATTTTGGAGCACAGAAAAATAAAGTCTGACACTGTTTCCACTGTTTCCCCATCTATTTCCCATGAAGTGATGGGACCGGATGCCATGATCTTCGTTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTCACTCTCCACTTTCACTTTCATCAAGAGGCTTTTGAGTTCCTCTTCACTTTCTGCCATAAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTCTCCCAGCAATCTTGATTCCAGCTTGTGTTTCTTCCAGTCCAGCGTTTCTCATGATGTACTCTGCATATAAGTTAAATAAGCAGGGTGACAATATACAGCCTTGATGTACTCTGTTTCCTATTTGGAACCAGTCTGTTGTTCCATGTCCAGTTCTAACTGTTGCTTCCTGACCTGCATGCAGATTTCTCAAGAGGCAGATCAGATGGTCTGGTGTCCCATCTCTTTCAGAATTTCCCACAGTTTATTGTGATCCACACAGTCAAAGGCTTTGGCATAGTCAATAAAGCAGAAATAGATGCTTTTCTGGAACTCTCTTGCTTTTTCCATGATCCAGCGGATGTTGGCAATTTGATCTCTGGTTCCTCTGCCTTTTCTAAAACCAGCTTGAACATCAGGAAGTTCATGGTTCACATATTGCTGAAGCCTGGCTTGGAGAATTTTGAGCATTACTTTACTAGCGTGTGAGATGAGTGCAATTGTGCGGTAGTTTGAGCATTCTTTGGCATTGCCTTTCTTTGGGATCGGAATGAAAACTGACCTTTTCCAGTCCTGTGGCCACTGCTGAGTTTTCCAAATTTGCTGGCATATTGAGTGCAGCACTTTCATAGCATCATCTTTCAGGATTTGGAATAGCTCAACTGGAATTCCATCACCTCCACTAGCTTTTGTTCGTAGTGATGCTTTCTAAGGTCCACTTGACTTCACATTCCAGGATGTCTGGCTCTAGGTGAGTGATCACACCATCGTGATTATCTGGGTCGTGAAGATCTTTTTTGTACGGTTCTTCTGTGTATTCTTGCCATCTCTTCTTAATATCTTCTGCTTCTGTTAGGTCCATACCATTTCTGTTCTTTATCGAGCCCATCTTTGCATGAAATGTTCCTTTGGTATCTCTGATTTTCTTGAAGAGATCCCTAGTCTTTCCCATTCTGTTGTTTTCCTCTATTTCTTTGCATTGATCGCTAAAGAAGGCTTTCTTATGTCTTCTTTTGCTCTAAATACCTTTACATGAATCTGTCAGAATACACATTTCAACTGAATCAATTTCTTCTCATTTTGTATGAAGATAAGAGCTCTCCTTATGACCCCATTGATGATATGTGTTTTCATTTCAG
Seq C2 exon
CAGCAGATGACCGTCGAGGACGTGGCCATCAAATTCACTCCTGAGGAGTGGGAATGCCTGTCCCCTGCGCAGAGGACTTTGTACTGGGACGTGATGCTGGAGACCTACAGGAACCTGCTCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030470:ENSBTAT00000016857:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development