BtaINT0006671 @ bosTau6
Intron Retention
Description
uncharacterized protein LOC777692 [Source:RefSeq peptide;Acc:NP_001071620]
Coordinates
chr25:1883332-1884607:+
Coord C1 exon
chr25:1883332-1883504
Coord A exon
chr25:1883505-1884463
Coord C2 exon
chr25:1884464-1884607
Length
959 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
TGAGTTTACTTCCTCTCTAGCCC
3' ss Score
6.7
Exon sequences
Seq C1 exon
GCACAGGCGTCCAGTGGAGGAACATGGGCCATATAGGAGGAGAGTTTAACTTCACTCAGGTGCTGCTGATGCTGCTGCTGGACTCTGTCTTATATGGCTTGGTGGCCTGGTATGTGGAGGCCATCTTCCCAGGAGAGTATGGTATACCCAAGCCCTGGTACTTCTTTCTCACG
Seq A exon
GTGAGTACTGATGCTGCTGTTTTATAGGTTGACACCAGGATTTTTATAGCTTGTCATCAATGTTCCTATCCCTCTTGGTGATATTGGTTTCACCTTCAAACTCCAAGAAATCTAAGTTGGGGTTCTCCAATCTGGATTCACCCCAAACCTGTCAACTTATGGTTGCCAAAGGAGCATGATTAATGAGTCTCAGTCTCTCTGACTCTTGCCCCACTGCTGATTCCCTGTGCAGACGCCCCTTAAGAGTGTGGCGGCTGTCTCATGGGCCCCCTTGAGTGGCAGGCCCTACATTCCCCCACAGAATACCACCCCAACGAGCTAGAGCCCTCAGGACTCCTTGGCCTCTTTTCTCTGGGACTGGTGGCAAGGCCCTGGCGCTCTTTGAGACCTCTGTGACCCGAGGGCACAGCTTTTGTTGATGACCCCATGAAGTTCTCAGAATCTCTTCTCTTCTACAATGACTGCATTTTTCTTACAAAGTTGAACGCTTTATGCTTGATTCGGTCCTCTTGCAGATTCAGTCTGATCCCATCTGAATTGCACAGGTCCTCACTTCAGGCCTTGGCAAAGGCCACTGTGCTTGCTCTTCTTGGTCTGTGGAGAAGTGCGTGGATTGTTAGCACCAGCGTTTCTCCAGACCTTTGCCCACAGGGAGGCTGCTGGCCGTCCCAACAGCTTCCCCTGTGCACCAGGAGTGTGCACGTGAGGCATCTTCTGTAGCTCCATCCCCCGGACCATGGGTTGTAGGTTGAAATGCAGTTTATTAGTAGTGAGTCTGTGAGCAAATTCTTGACTCCTTCAGGCATCATCAAATGTTCGATACCAGGAAATCTGGCAGGTGAGGCTGAGGATGGGGGTGGGAGGAGGGAAGTGTGAGAATTTAATTTACCAAAATATTTTTCTTCCAGAAGAAGAAGCTAGTTCACCTAAACATATTAATGAGTTTACTTCCTCTCTAG
Seq C2 exon
CCCTCCTACTGGTGGAGAGAACCTACATCCCTTAGGAATCCTGTGGAAGACTTAGAGGATCCTCAGCAAGCTCTGGGAAACAAGTTCATTCAGGATGAGCCTACCAATTTGATAAAAGGAATTGAAATCCAGCATCTATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034643:ENSBTAT00000037495:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.083
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(8.4=63.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTCCAGTGGAGGAACATG
R:
TTGTATAGATGCTGGATTTCAATTCC
Band lengths:
310-1269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]