BtaINT0007456 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MI18]
Coordinates
chr5:101256599-101257154:+
Coord C1 exon
chr5:101256599-101256775
Coord A exon
chr5:101256776-101257066
Coord C2 exon
chr5:101257067-101257154
Length
291 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
3' ss Seq
CAAACATTCTTCTTCTTCAGGTT
3' ss Score
10.43
Exon sequences
Seq C1 exon
GTGATATACTAGGCTCTGCAATGCAAAATCTTCAGAATCTTCTCCGGATGCCCTATGGTTGTGGAGAACAGAATATGGTCCTTTTCACCCCTAACATCTACGTTCTGAACTATCTAAATGAGACAGGACAGCTCACTGAGAAGATCAAGTCCAAAGCCATCAGCTACCTCATCAGTG
Seq A exon
GTGAGAGATTACCCCCAAAGGAAAAACATTAGTTGATTTCCTAAATATCTCCTCCATTGAACTCAAATCTACGTCCCTTCAATTAAGATTTAGTAATTACCTTTGCTGTGACATCCAACAAGATGTTTCACAATACAACCACAGAATTAAATGGCATCATCAAATCTTGGAGACTTTGTAGTAAAATAGTAGCTTCCCTGTGATTTCTCAATGAGTTTTAAGGAAAAGCCTGATTCCTTCTCCAGTGTCTCTGTTATTTCCTAAATCTATGCAAACATTCTTCTTCTTCAG
Seq C2 exon
GTTACCAAAGACAGTTGAACTATAAGCACAGTGATGGTTCTTACAGCACCTTTGGGGATCGTGATGGTAGAAGTCAGGGAAACACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038461:ENSBTAT00000037743:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
A:
NA
C2:
PF076789=A2M_comp=FE(11.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACTAGGCTCTGCAATGCAA
R:
CAAGTGTTTCCCTGACTTCTACCA
Band lengths:
260-551
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]