MmuINT0130088 @ mm10
Intron Retention
Gene
ENSMUSG00000030359 | Pzp
Description
pregnancy zone protein [Source:MGI Symbol;Acc:MGI:87854]
Coordinates
chr6:128491165-128491672:-
Coord C1 exon
chr6:128491496-128491672
Coord A exon
chr6:128491256-128491495
Coord C2 exon
chr6:128491165-128491255
Length
240 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
GACTGAAATTCCCTCTCCAGGGT
3' ss Score
7.84
Exon sequences
Seq C1 exon
GTGATATACTGGGCTCTGCAATGCAAAACCTCCAGAATCTTCTCCAGATGCCCTATGGCTGTGGGGAACAAAACATGGTCCTTTTTGTCCCTAACATCTATGTTCTGAACTATCTGAACGAGACACAGCAGCTGACAGAGGCGATCAAGTCCAAAGCCATTAACTACCTCATCAGTG
Seq A exon
GTAAGCAACTTTACCAACATTTCCCAGTGCCTTCTTCTTGGTTAAGATTTGGTCATTATTGTTGCTGTATTTCCAATCAAATGACCCTCCTGAGGATAAGGAGTCTCAATAGTGTCCATAACCTTAGAAGGATGTGATTAAAACATCTTTACTCAATGGTTCTTTTATAGGGTTAAGACAAACAAATAATAATTGACTAATGTCGCTGCAGTTCATACATGACTGAAATTCCCTCTCCAG
Seq C2 exon
GGTACCAGAGGCAGCTGAACTATCAGCACAGTGATGGCTCGTACAGCACATTCGGGAACCATGGTGGTGGCAACACTCCGGGAAATACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030359:ENSMUST00000112132:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.161
Domain overlap (PFAM):
C1:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
A:
NA
C2:
PF076789=A2M_comp=FE(11.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATATACTGGGCTCTGCAA
R:
CAAGTATTTCCCGGAGTGTTGC
Band lengths:
268-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types