BtaINT0008310 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MIB1]
Coordinates
chr26:103962-105270:-
Coord C1 exon
chr26:105248-105270
Coord A exon
chr26:104079-105247
Coord C2 exon
chr26:103962-104078
Length
1169 bp
Sequences
Splice sites
5' ss Seq
CAGATAAAA
5' ss Score
0.41
3' ss Seq
AAAACTCCTCTTGCTTTCATAGG
3' ss Score
-1.58
Exon sequences
Seq C1 exon
GCACTAATAGGAATGTGGCACAG
Seq A exon
ATAAAAATGATTTCTCACTTTTAATTTTTGTTTTTTAGAATTTTTTTTGAGGATTGATATTTTCTGACAACTTTCAGCCTTTTCAGAAGTCAAGGGAGTCTACAGAGTTCCTTGGTCATCTAGTGGTTAAGACTCACTGCTGTGGGCCCAGGGTTCAATACCTGGTGGGGGAACTAAAATCCTGCCAGCTACTGGGATGTATTGTACAACATGGGGAATATAGCAAATATCATATAATAACTTTACATGGAGCATGACCTATAAAAATTGTGAATCACTATGTTGTGTACCTGTAATATATAATCATATGTACTATGCATCATCTATATTTTAATTAAAAAGAAGCAACTTTAGATAAAAAGACCTTATGTTAATTAAATCAATGGGAAAAATGAGAAATGAACAAACAAAAATGCCACCAATTATAGTGGTACAGACATTGTGAATTATAAATTTCATTCCAATGTCAGAGACGTTAAAATGTCAGAAATTGAAGGTATTAGAATCACTGAAGCATAGTGTTGTCTCTAATCCTCAAAATGTATCTGCAAAGTAGGTATGATATCCTTTGACTTCATTGAGATGTTGTCCTTGTAAAATCAGAGAAGGCAATGGCACCTCACTCCACTATTCTTGCTTGGAGAACCCAGGGATGGGGGAGCCTGGTGGGCTGCCATCTATGGGGTCGCACAGAGTCAGACACGACTGAAGCAACTTAGCAGCAGCAGCAATAAGTATGATTATATTACCTAACAGTTACTGAGCTGTTACCTGTGCCAGGAATGGTTCTAAACTCTTTGCGTGGATCTCATTTAAGTGTCGCAGTGCTGTCCTGTGAGAGAACTACTTCTCTCTCTCCATTTTGTTGATGAGGAAATTAAGGCTCAGAGAGGCTGAGTGACAGCTAAGTGACAGAGTGAAAGTCAAATTCAAACCCAACTTGAGCTGAAACTCGAGATCATGGCCATTCTATTCAAGTAAATTGTTCTTTCATTACTGTGTTAAGAAGAGCTAATGCTAATATATAATGTTCTTTCTCCAGAAGGAAATGAAATATTTGTTTTAGAGGGATAGGAATAGCATGCTATTGAATGTTTTCAATCACAGGAACAATTATTTGTTTTGAAACAGTAACACTACAGTTTCCTGAAAACTCCTCTTGCTTTCAT
Seq C2 exon
AGGACTGCCCTCCACTTGGCCTGTGCCAATGTCCATTCAGTGGTGGTCACTCTGCTCCTGGAGAGAAAATGCCTGCTTAACCTCTGTGACAATGAAAACAGGACAACACTGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040222:ENSBTAT00000025538:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(7.4=100)
A:
NA
C2:
PF127962=Ank_2=FE(40.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]