BtaINT0008420 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MGB9]
Coordinates
chr26:18353138-18353544:-
Coord C1 exon
chr26:18353466-18353544
Coord A exon
chr26:18353191-18353465
Coord C2 exon
chr26:18353138-18353190
Length
275 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTA
5' ss Score
7.52
3' ss Seq
TGGGAAGGATATTTTAAGAGTAC
3' ss Score
-18.85
Exon sequences
Seq C1 exon
TTATTTTCTGGCTCTCCAGCTGTCATGATGACACCAACAAGACTGAAATGGCCTGAGGGGAAGAAAGAGGGGAAAAAAG
Seq A exon
GTACTAATTGCACTTACCCCGTATGTCTTAGTGAATGTCGTTCCTTTCTGCATCTAGTCAGTCAGCAGCAGGTTTTGAATTCCTAGTGCGGTATGGTGGTATTTGGAAGTGATGTAAAAATGACAGGGCTGGGTCCTTACCCTGGAGTTCATGTGGCAGATGGTTACTGAACATCGACTCAGAACTGTCCCAGGTGCTGAGGGCAGAGCTGTGAACACAGACCCACAGGGTCGCTGAATCCTCAGACAGGACACGTGGGAAGGATATTTTAAGAG
Seq C2 exon
TACTTGTTAAGCAAATTAAAAGCAAGTGTAAACTAACTTGTGAAACCAAGTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040427:ENSBTAT00000052139:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.778 A=NA C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]