MmuINT0017937 @ mm10
Intron Retention
Gene
ENSMUSG00000025154 | Arhgap19
Description
Rho GTPase activating protein 19 [Source:MGI Symbol;Acc:MGI:1918335]
Coordinates
chr19:41766588-41773128:-
Coord C1 exon
chr19:41773050-41773128
Coord A exon
chr19:41770197-41773049
Coord C2 exon
chr19:41766588-41770196
Length
2853 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTC
5' ss Score
7.46
3' ss Seq
TTGTTTCTCTTTTAACCTAGGAT
3' ss Score
9.03
Exon sequences
Seq C1 exon
TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAAG
Seq A exon
GTACTCACTGGAGCCACCTCTGTCCTCACTGCCCGGGCTTTTAGCCTGTGTCTTCTTGGTCAGCAGTGTTTTCCATTTGTGACGTCTAAGGTGGTATAATTGTAGTCATAGAAATTTGGATGATTATTCTGCTTAGCACTGCCTTCAGGTACTGAGGGGCAGAGTTCCAAACAGACTCACTTATACCTTCTGTGGATAGACAGGATCCACCACCCATCAGCTGACTCACGAACACTTGTTAAACAAGACAGCACAAGTACAAATGGCTTTGTGAGGCTGAGAATGTCCATGCCAAAAGGACACTCATGAAAGTCATGCTTCTCTTTTCTGCAGACTTGAGTAGTCGTGGAAGGGTGCTGGAAATCATGTCGGCATGGTTTTGAAGTTTTTTACTTCAGAGAGGATTGTTATCATGGGCTGATAGCTTTTCCGTTAAAAAGCTGCTGTGAGCAGGCATGGGTCTGCACAGCTGAAATCCCAGCACTCAGGACGGAAGGCAGGAGGGTTTCTGGAAGTTCAGTTGCTGCTCCATGTATCAGTAGTGGAGAGAGCACATGTAGACATGTAGCTCAGGGGTAGAGTGCACATGTGCGGTCTTGGGTCCCATCCCTGGGCAGCAAAGTCATTGTGATGAATCTTTATTCTCTTCTAGAAACTTAGCTATTGTGTGGTTTCTTACTTTCTACCTTGATGAATAGCCGAGCTCCCTTCTCCTCCCACTTTCTTTTGCACAGAATTGTGCTACTGAAGCAAGCTCAGTATTTGAGTTATTCCTATCCAAATATTTCTTTTTAAATGGTGTTTAAACACTTTTTAAATTTTCTTTTTAAACTCAAAGTATGAGTTTTTTTTTTTTGTTTGTTTGTTTAAGAATATAGTGTTTTGTATTGTTAGTTTTTTGTTACGTTCATATTTAAAGATAAGCAGAAAGTCATGTCTTTCTGTTTTGTCAACTCTGCTTTGGAAAGAAAGAAGGGAGTTTTCCAGGAGAGTAGAGGCTGCTGCTGCTGTGACACGTGTTGGTGGATGAGGAACGCATCGTCTCCTGTCAGAACACCCTTCCTCCACCTCCTGTCCTGAGGACAGTGCTCTTGTCTTCCTCTTCAGTGTTCCGGTTTTCCCTTCTGTTTACTTTTATTTTTGTGGTGATAAGGATTGACTCAGCGCTTCACAAAGGCTCCAAGATTGAGCTGCACTCTGAGGCAGCCCCCTCCTTTCTTAAAAATGCTTTGTTTTCTTCCTTCCTTCCTTCCTTCCATCCTTCCTTCCTTCCTTCCTTCCTTCGTTCCTTTTTTGAAACATTAATTTTCTCAGGTTTTCAGGTTGGCATTAAGCTTATGATCTTCTTACTTCTGCCTCCCGAGTAGCTGGGATTTTAGATATTATGAAGGAGTGCCACATCTGGCTTGTTCAGGGCTCTTTGAGTCTAAGCTTCTACTCTTCTTTCTTGTATTCACCCTCTCAGCACCTGCTCTGCTTCCACAGCTCACTCCCAAATGACATCCTCAGCTCTGAACTCTCCAGCCTCCAGATGTGTCCTTTCTTACAGGACAGTTGATGGAATCCCTGCTGTTCTCAACACTAGAAATTAGTGCAGTGTCCCTGTCACCATCAACAGCCATGATGCAGTCTTCTGCTTAGCACAGGGCTTCTTGGAGTTCTCTGTGTGGAGCTGTCCTGTGCATTCATTGTATGGTGTCTAGCAGCTGTGACCCAGCAGATGCCACTAGCATCCTTCCCTCAGTTGTAACAACTGAGAGTTCCTCCAGATGTACCAGCATCCCTTGAGGATTCAGGGGCAAACTCACCCCAGATGGGAACACATTGATGGAGCACCCCTTCATCAAGGGGCATTATTTTCAGCAATCAAATCTTCCTAATTCTTTTTTCTTTCTTTTTTGTTTTTTTTTTTGTTTGTTTGTTTGTTTTTTTGTTTTTTGTTTTTTGAGACAGGGTTTCTCTGTGTAGCTCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGTTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGCACCACCACGCCCAGCTTTCCTAATTCTTTAAAGTCTAGGTGAACCTCTCCTCTCTGAAGCCTTGTCTGGCTAACCCAGCCAGCCAGAATAAGTTTCTGTTGAACTCGTGTCAACAGAAACAATCTAGGGGACAATCACATCAGTGGTGCAGTGCTTGCCTACCACATGCAGTGCCCTGGGTTCAGTTCCTAGTGCCGCCAACACACAGCTTTGCACACCCACCCATCCGCCAACACACACCCTTGCACATCACCCACCTACAACCCTTTTGCTTTCTCTTGTCTCAGTAGTGTCAGCAGCTTGCTGTTTTTGGTTTTAGTAAAGGGTAGTGCTGCTAATAGCAGGACCTCCGTACTCATTAGACGTGGGTCAGTTCTCTATTGTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAGTAGCTGATGGGGCAGGTGAGTTTCTGTGGGCTGCAGATTCCACATCTGTGAAACGACAGCGTACTACCCCTGCGGTGGGAAGCTGTGAGGACAAATGAGAAAATGGACACAAGGGCCTGGGGCAATAGCCATCACCACACACGCCCTACTAAGTGGTGACTGTTACAGTCAGTAAGAAGACATAACAAACTGGGTTAGACAAGCGGCGCAGACAATGTTTACTTGGTAGAGTCACACTCTCAAATTATTTCATCGTAAATTTGGAGAGAACACTAAGTGTAGATTTTGTGGCTTTTGGTGGGTATTAAAAAAAAGAAAGTTTTAAAGCATGTCTAATTGTCTTGTTTCTCTTTTAACCTAG
Seq C2 exon
GATTCTTTTGAAGGCTCTCTTTATTACTTCTGTCCTCTACAGTGAAGTTTCTCTTCAGTGGGACAAGTGTTATTTCTCTTCTCAGTGAAGCTTGGACCTGCAGCTGCTTGCTGCATTTTGACTTGTGAAAGCCAACTCATACCCTGACCCGACTGATACCTCTAACCCCCTCACTGGATGTCTCTGAAGCTGTGCGTCTGTGGAAGTGCTGTGCTCCGTGTTTGTTTTTAATGTCAGAAGCCACTAGTGCCTGCCCCAGCTTACACAGTGCAGCAGGTAGGCAGGGCCAGCCACACCTACTCAGTGTGCTTAGGTCGGTTGGTTTCTTCAAACAGGATATTTTGTGTTAATTGTTAGTAATATTTTTAAAAGTACTGTAGGTCTTAGTGGAGTATTATTATTTCCAACTGGTATTTGAGGCTTTCCTCTGTGTCAGTAACTGCTTGTTTTAGAAGCCATTATTTTGATAATTAAGCGAATTACAAGTTAAATGCTTTTGACCCCTTTTTATTTTAAGCTTGAGTAATCTCTTTATCTTTGTGTTCAAAGAACTTACAGCTTTCCTAGACAATCTATTATTTCTTGTGTCTAATATAGAGGACTTGACCTGGCAATGAGAAAGAGGTCAGTACAGTGTATTTAACACATCTCAGTTATTAAGCTGCACCCCATACCCCTGTCTTCCCCTTATGATGTGAGATGGCTGTGTGGTTGTTACCTTGGTGATGTGAGATGGCTGTGTGGTTGTTACCTTGGTGATGTGAGATGGCTGTGTGGTTGTTACCTTGGTGATGTGAGATGGCTGTGTGTTTGTTACCTTGGTGATGTGAGATGGCTGTGTGGTTGTTACCTTGGTGATGTGAGATGGCTGTGTGGTTGTTACCTTTGTGATGTGAGATGGCTGTGTGGTTGTTACCTTGCTTCTTTCATTATCATCCTCTCACCTAGAACATGGCTGGTGCCACTGATACACTCTGTGCCTGGTTACTGTCACTTTGGAAATGTCATGATCTGCTACTTAGAGGAGCTTGCTGCAGTGTGCATGTGGTGAAAACAGAAGCAGGCCGAGGGGCTGGTTGGCTTGGGTAGGATGCTGTCACTCATTCCTAGGGATCAAATGTGCTGCTCACCTGTCTCCTGAGAGCAGGTTGGCATCAGGAAAGGCACGAGTGGCAGTCTCTGCAGGGTCCCCAGAGGGAGCAGTTGTTATGTGTCCCCGTAGTCTAGAACAGTTGCTTCCTGCCCATCTCCTTGTCTGGATGGGTACAGGAAGTGGTGGAGCGTGGAGAGCCACTGTCTCCTGAGCCGCAGGTGGCAGTTGCGGATGCTGAGGTATGGGCCTGGCTCTGTGGAACTAACTGTGAAACCATGCTCACCCTACTGTGGGGAACCAGATACCCAGCAAAATACGGTTCCACACTGATGATAGACAGTTGAACTTGTGTTATTGTTGAGATGAAGGCTGATGTTGTCTATCTGTCGGCCCTCTCTTCCATCCTACACTGTTTCATTGCTGTAACAGCAGTGCTGAAGGAAATGTGATGTTTTCCCTTCTAGCTGGATAGTTTGGGAGCATGGAGGTGTGTGATCTATAGTGGATTTTAAGTTCCATTCTCTAAAGCAGTTTTAGGTCATCCTTAAGGATCTTTATTAGCAAATTCATTTGTCTAGGTTTCTGACTCTTTCTGGTGATGTTGTTACTAAGAAAAAGGTTCTTTTCTTTTTGAAATATATTTCTTATGCCAGGTATATAGTGAGGTCAAACAGAAACCTCCTTTGTGTTAGCAAATCAGAGATGTTCTCCTCAGCATGGAGCCTGCTTTCAGTGTACCCCACCATGCTGGAATGTAGCACTATGCAGGGATGCAAGCCAAGCAGTGCCTTGATGCAGCCAGGAGTTACACACTCTGTGAGCAAGAAAGAGAGAGCGCGGGACTGAGGAGCCTAGTGTGGGTAGAGGGAAGCGATGCCCAGGGATGGTCTGGGTGAGAGAGAGGTGCCCCATGCGCTTGCTCTCTGTGGCTGGCCTCTTGGGCAGTGAGTTACCACGTGCATTTGGGAATGTGGATTTCATTTATTTATTGGATAGTCATTACTTGCTGTAAGGGTATTTTAGGTCATTTTTTCTTGTAGAAGCTGTGATCCAGTGCAGAATAGACTTGAGGAAAAGCATAACCTTTTGAGTCTTGTAACATGTGGCTTTGTAACCTGTGGTATCTTCTTGGAAACGCAGACAGAAGCTCCATCGTCGTCACAGAAGGTTGCTGCCGTCCTTCTGACAAGGCGTACAGTTGCTGTTTTGAGCCAGTATTTAACTAATGTTTTTAACTAATGTTTGTTTGAGACAGGGTTTCTCTGTGGTCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAGTTTTCCTGCCTCTGCCTCCCCAGGGCTGGGATTAAAGGCGTGAGTGTAGTCACTGCCTAGCTGACCTGTGTCTTAAGGGTTTTTATTATATTTATTTTCCATGTTGGCGTAGTCTTTGTGACAGAACCTTTCTTTTCTTTCTGGGTTAATCGTCATAGGCTTTGATGTTGTGTCAAAGTGTCATCTGGTGGTTATTGTTGCCAACTATGAAGAGACAGATCCTATCTGATCTGTATCTGCACTAGGTAAATGAATAGAGGCTGTGGGCCCTTTCTCTGACGTTCCACAGAAGTGGATTTTCTCACTGAGACCAGTGATCAGGTTTGAACCCGCCCCCGCCCTGTCCCCCCATTCCCCATGTCACATGCACTGTGTAGGGCACAGGTGGGAGACAGTATTGGTTAGAACCAAGTGCTGGAACATTCTAGAAGCACAGCTGATGGGGCCTGAGGGAACCCACAGTGGTCCCTCCACACAGCATGTGCTATACTCTGAAGGTCCTCCCAGAGTCAGTCAGGAGTGATGAGGAAACACCCTGGGGGATGAGGCAGCACAGGATGCTGACTGGCAGGTTGTGTGCTGAGGTCTCTTTTCTGTGACATCCTTTCCTCTGGAGACAGCATCATCCCTGCTCTCCTACACTCTAAAGTCTTCAGACTGAAGTGAGGGTCCAGATCTAAACCAGCAGGACTGTCCCAGAGTTTGCAGAGAATCTGGCTTCCTAAGATGAAGGTTTTGAGTGACCTTAGTCCTGGTAGCCTGATGTCAGACTCCCTGTCAAAAAGCTGGCTTTACTAGGCAGCCAGTGCTGAAAGCTGTGTGGAGGTAGGGCAGTGAGGAGATGGAGGATAAATAATAACCTGAGTGCTTTGTCACCATGGAAACTGGAGTTCCTGAGGCCACAGCCCATGCTGAAGAGCTTTTGAGCATGCCCCTGACATGCTTGGTCCAGAGGCTATAGAGAAGGAGTGCTCTCACCCAAGGCCTTTCAGCAAGGCGTGCCTGTGCACGCTCTGTGTGCTCGCTCGCTCATTTGCTTGCTCACTCGACCCCCAAAAGGTTTCTTAGGAGAAGGTTGTACCTATTTGTTATTTTTTATTATTTTGCATATATATATGTAATTGTAAAGAAACAATCATATATATTGTCTTTTATATTCATGTAATATTCTGAATTAAATTTTTTCTGTTTCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025154:ENSMUST00000026150:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.630 A=NA C2=0.280
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types