RnoINT0019921 @ rn6
Intron Retention
Gene
ENSRNOG00000048166 | Arhgap19
Description
Rho GTPase activating protein 19 [Source:RGD Symbol;Acc:1593044]
Coordinates
chr1:261015123-261021524:-
Coord C1 exon
chr1:261021446-261021524
Coord A exon
chr1:261018587-261021445
Coord C2 exon
chr1:261015123-261018586
Length
2859 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTC
5' ss Score
7.46
3' ss Seq
TTGTTTCTCTTTTAACCTAGGAT
3' ss Score
9.03
Exon sequences
Seq C1 exon
TTCTTCTCTGGCTCTCCAGCTGTCACAGTGACACCAATGAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAAAAAAG
Seq A exon
GTACTCACCAGAGCTGCCGTCTGTCTTTACCACCCGGGCTTCTGTCCTGTGTCTTCTCAGTCAGCGTATTTCCCTTTTTCGATGTCCAAGGTGGTGTGGTATACTTGTAGTCATAGAAATGGATGCTTAGTCTACTTAGCACTGCCTTCAGTACTGAGGGCAGAGTTCCAAACTGACTCACTGACACCTGCTGTGGGCAGACAGGACCCACACATGCATCAGCTGTCTTATATTTGTTTTGTTTTGGTTTTGTTTTTTACTGATTTATTTATTATGTATATAGCACTCTGGTTGCTGGGAATTGAACTCAGGACTTCCGAAAGAACAGCCAATGCTCTTAGCCTCTGAGCCATTTCTCCAGCCTTTAAGAACACTTGTTAAACAAGAAGACACAAGGACAAATGGCTTCGTGAGGCTGAGAACGTCCATGCGAAGAGGACACTCATGAAAGTCATGTTTCTTTTCTCTGCCAGCTTTCGTAGTCGTGGAGAGACCTTAGAAGTCGTGTCAGCATGTTTAGTTCAGAGAGGAGTTAGCACGGTTGTTCTTAGCTTTTCTGTTAAAGCTGCTGTGAGCAGGCATGGGACTGCACAGCTGAAATCCAGCACTCAGGCAGGACTCAGGAGGGATTCTGGAGTTCAGTTGCTACTCCATATGTCAGCAGTGGAAAGAGCTCATGTAGACATGTCATTCAGTGGTAGTGCACACTTGTCCCCACCCTGGGACAACAGAGTCATTGTGATGAATCTTTATTGTCTTCTAGAAAATTAGGCTGTCGTGTGATTTCTTACTTCTTACTGTGATGAATGACCGAGCTCCCTTCTCCTGCTCTCTTTTGCACAGAATTGTGCTACTGAAGCAAGCTCAATATTTGAGTTATTCCTATCCAAATATTTCTTTTTAAATGCTTTTTAAAAACACTTTAAATTTTCTTTTTAAACTCAAAGCATGAGTTATTAATATTTTTTAAAGAATATGCTGTTTTGTCTTGTTAGCCTTTTGTTACATTCATATTTAAAGATAAGCAGAGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGCTCTTCCTGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGCTGATGCCCTCCTCTGGTGTGTCTGAAGATAGCAATAGTGTACCCACATAGAATAAATAATAAATCAATCTCGAGCAAAGATAAATAAAAGCAGAAAGTCATGTCTTTTCATTGTGTTAGCTCTGCTTTGCAAAGAAAGAAGTGAGTTTCTTCAGGACGCCCTTTGGCGGATGAGGCATGGCATCCTCTTGTGTCAGAACACCCCTCCCCCACTTACCTGTCCTGAGGGCACTCTTCCTTCCTTCCTTTCCTTTTTTTTTTTCTCAGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGGGCTCTACCACTGAACTAAATCCCCAACCCCCCTTCCTTTCCTTTTTGAGACATGAATTCTTTTAGGTTGGCAATCTTCTTACTTCTGCCTCCTGAGTAGCTGGGATTTTATTTGGATTCCCACATCTGGCTTGTTTATGGCTAACTGAGTTTAAGCTCTCTCCTCTTCTTTCAGCTCCTTGCTCTGCTTCCACAGCTTTCTCCCAATGGCATCCTCAGCGCTGAGCTCCCAGGCATGCAGCTCAGAGCCTGGCTGCTCTCACAGGACAGTGGGTGGGATCCTGGCTGTTCTGGCACTGATGTTGTAAACACCCTCAGGAGAAGATAGTGCAGTGTCCCTGTCCCCATCAGTAGCATGATGGAGACCTCTGCTTAGCACAGACCTCTTGGTCACAATTCCCTGTGTGGAACTGTCCTTGAGGTTACCGGGGCAAAATCACCCCAGATGAGAACGTGGTGGAGCGCCCTCTCGTCAAGGGGCATTATTTTCAGCAGGCACAACTTTCTAATTCTTTTTTTTTTTTTTTTTTCCGGAGCTGGGGATTGAACCTAGGGCCTTGCGCTTGCTAGGCAAGTGCTCTACCGCTGAGCTAAATCCCCAACCCAACTTTCTAATTCTTTAAAGTCCAGCTGAACCTCCGCTCTCTGAAGCCTTGTCTGCCTAACTCAGCCAGACAGAATAGGTTTCTGGTGAACTCTTGTCAACACTACTGAGTCTGGACGTTGACTATGATTTATGGTGTTTACTTCATCTGGGCTGTCGTTTCCCTGCATCTGGTTCTAGGAGGCAAAGCAATATGTCCTGGTTAGGGACATATCGTACCAGGGCTACAGTACTTGCCTAGCATATGCAATGCCCTGGGTTCAGTCCCTGGTCCCCCCAACACACACACTTGCACACCCACCCACCTACAACCCTTTTGCTTTCCCTTTGTCTCAGGATGTCAGTGACTTATGTTCTTGGTTTTAGTAAAGGGTACTGCTACTAACAGCATGAGCTCCATATTCACTTAGACTTGGGTCAGTTCTCCATTTTAGTGTATAAAAGCCTTCTATCCTGGGGCAGGAGCGCTTCTGTGGGCTGCAGATTCCAAGTGTGTGAGATGATAGAGAACTACCTCCCCTGTAGGTAACTGTGAGGATGAATGAGAAAATGTACACAAGGGCCTGGGGTGACAGCCATCACCATACCCACCCTACTGAGTGGTAACTATCACGGTCGGGTGGGGAGTTAGCAAACTGGAGTAGACTAAGCAGTAGATGGTATTTATCTGGTAGAGGATCACACTCTCAGATTATTTAATTGTAAATTTGGAACGAATACTAAGTGTAGATTCTGTAGCTTTTAGGTGGGGTATTATTTATTTAAAGAATGCTTTAAAGCATGTCTAATTGGGTTGTTTCTCTTTTAACCTAG
Seq C2 exon
GATTCTTTTGAAGGATCTACTTACTACTTCTGTCCTCCACAGTGAAGTTTCTCTTCAGTGGGACAAGTGTTATTTCTGTTCTCAGTGAAGTTTGGACCTGCAGCTTGCTTGCTGCCTTGTGAAAGCCAACTTAAACCCTGACCCGACTGATACCTCTAACCCATTCACTGGATGTCTCTGGAGCTGTGCCTCGAGAGAGTGCTGCACTCTGTGTTTGTCTTTAACCGCAGGAAGCCACTGCCTGCCTGCCCAGCGTACACAGTGCAACAGGTAGCAGGCCAGCTATGCTCACTCAGTGCACTCAGGCTGGTTCTCTTTCTTCAATTAGGACATTTCGTGTTTAATTGCTAGTAATATTTTTTAAAAGCACTGTTGGTCTTAGTGGATTGTTATTATTTTTAACTGGTATTTGAGGCTTTCCTCTGTGTTGTTAGTATTGAGTAACTGTTTATTTACTTGTTTTAAAAGCCATTATATTGAGAGATAATTAAGTGAATTACAAGTTAAATGCCTTTGACCCCTTTTCATTTTGAGCTTGAGAAATCTCTTTATCTTTGTGTTCAAAGAATTTACAGCTTTCTTAGACAATCTATTATTTCTTGTGTCTAATAGAGAGGACTTGAGCTGGCAATGAGGGAGTTCAGTATAGTATATTTTAACAGATCTCAGTTATTAAGCTGCACCCATGCCCTGTCTTCCCCTTGGTGATGTGAGAATAGCTGTGTGCTTGTTACCTTGCTTCATTATCATCCTCTCACCTAGATCATGGCTGGTGCCAGTGCCACACTCTGTGCCAAGTTACTGTCACTTGAGAAATGTCATGATGTGCTACATAGAGCTTGCTGAGTGCATGTGGTGGGAATTGAAGTAGGCCCAGGAAGGGCTGGCTGGCTCTGGTAGGACCCTGTCACACATTCCTAGGGATCAAATATGCTGCTTACCCCTCTGTCTCTCTTCTCTGTCTCTGTGTCTGTCTCTCTCTGTCTCTGTGTCTTTCTGCCTCTGTGTCTGTCTCTCTCTCCCTCCCTCCTTCCCCCCACCTTCCCCTCCATAGCAGCTTTAAATCAGGAAAGGCATGGGTGTGGCAGTGTCGATAAGATCTAAGAGTTTCCACAGGGAGCAGTTGTCCCCTTGGTCTGCAGCAGTTGCCTCCTGCCCATCTTCTTGTCCGGATGGGTACAGGAAGTGGTGCAGGATGGAGAGCCACTGTCTAGTGAGCAGCAGGTGGCAGTCGAGGATGCTGAGGTACGGGCCTGGCTCTGTGGAACTGTGCCACCCTCTTCCCCATACTGTGGGGAACCAGATACCCAGCAAAATACGGTTCCAACCTAATGATAGACAGTTGAAAATGTGTTATTGTTGCGAGGAAGGTTGACTTTGTGTCTGTCTGTCAGCCCTCTCTTCCACACTCCACTGTTTTGTTGCTCTAACAGCAGTGCTGAAGGAAATGTGATATTTGGCTTTCTAACTGGATAGTTTGGGAGCAGTGGAGGTGTATGAATCTATAATGGATTTTAAGTTCCTTTCTCTAAAGCAGTTTTAGGTCATCCTTATTAGTAAATTCATTTGTCTAGGTTTCTGACTCTTTCTGGTGGGTTTGTTACTTTTTAAAGTTCTTTTTAAAATAAATTTCTTGTGCCAGGTATATAGTTAGGTTAGACAGACATCCTGTTTATGTTAGCAAATCAGAGGAGTTCTCCTCAGCATGGAGTTCACTTTAAATGTGTTCCCCCATGCAGTAATGTAGCACTATGCAGAGAGGGCCAAGCAGTGCCTTGATGCATCCAGGAGTTTACACTCCGTGAGCAAGAGAGAGAGTGAGAGAGAGAGAGCAGGACTGAGGGGATGAGTGTGGGAGAATGGAAGCAACACCCAGGGGTGGCCTCAGTGAGGTGGTGAGAGAGAGGTGTGCCCTCTCTGTAGTTGGCCTCTTGGGCAGTTAGTTACCACGTGCATTTGGGAATGTGTATTTTATTTATTTATTGGACAGTCATTACTTGCTTTAAGGGTATTTTAGGTCATTTTTTTTCCTATAGAAGCTGTGATCCAGTGCAGAAGAAACTTGAGGAAAGCATAACCTTCTGTGTCTTGTAATATGTGGCTGTTCTAACCTGTGGTATCTTCTGGGAAACTCACAAACTCCATCGCTGTCTCCGAAGGCTGCTGTTGCCCTTCTGACAACGTGTACAGTTGCTGGTTTGAGCCAGTGTTTAACCAATGTTTTTAACCTTTCGTTTGTTTGTTTGCGACAGAGGTTTCTCTGTGTAGGTGAAACTCGCTCTGTAGATCAGGGTGGCCTTGAATTCAGAGTTTTCCTGCCTTTGCCTCCCCAGGGTTGGGATTAAAGGCGTGAGTGGCCACTGCCCAGCTGACCTGTGTCTTAAAGGATATTTATGTATTTATTTCCATGTTGCAGCAGTCTCTTTGAAAGTACCTTTCTTTTCTTTCTGGGGCTAATTGTCTTGGCTTTGTGTCAAAGTGTCGGGTGGTTATTGCTGTCAGAGGGACCCAAGTATGATGATTCAGATATCTGATTTGTATCTGTACTGGGTAAGTGAACAGAGGCTGTGGGCCCTTTCTCTAACCTTTTCTCTAATCACAGAAGTGGATTTTCTCACTGAGATGAGTGATCAGGATCAGGTTTGAACCCGCCCTTGCCTGTCCTGTCCCCCACTCCCCATCACACATGCACTGTGTAGGAACAGCTGGGAGACAGCATTGGTTGTACCTAAAGCACAGCTGATGGGTCCTGAGGGAACCCATAGTTGTCCCTCCACACAGAACGTTCTGTACTCTGAAGGTCCTCCTAGAATCAGTCAGGATTGCTGAAGAAGCACCCCTAGGAGATGAGGCAGCACAAGATGCTGACAGGTTGTGTGCTGGGGTCTGTTCTCTGTGACATCCTTTTCCCCTGGAAACAGCGTCATCCCTGCTCTACACCCTAAAGTCTTTAGACTGAAGTGAGGATCCAGATCTAAACTAACAGGACTGTCCTAGAATTTGGAGAGGATTTGGCTTCCTAAGATGAAGCTTTTGAGTGACCTTAGTGTCTAGTGGGCTGATGGCAGACTCCCTGTCAGAGCTGGCTTTACTAGACGGCTAATGTTGGGAGCTGTGTGCTGTTGATGGAGGTAGACAGTGAGGAGATGGAGGATAAATAATAGCCTGAGTGCTTTGTCACCATGGAAACTGGAGTTCGTGAGGCCACAGCCCATGCTGAAGAGCTTTTGAGCATGGCCCTGACTTGCTCAGTCCAGTGGGCTATAGGGAAGGTGTTCCCTCACCCAAGGCCTTTCAGCAAGGCTTGCCTGTACACGGCACTCTGTGCTCCCTCGCTCCCTCACTTGACCCCAAAAGGTTTCTTAGGAGAGGCTGTACCTATTTGTTATTTTTGATTATTTTGGATATATATATATACATATTATGTAACTATAAAGAAACAGCCATATATATTGTCTTTTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048166:ENSRNOT00000071417:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.407 A=NA C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]